Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq16268 107 2e-17 seq1323 107 2e-17 seq2508 100 3e-15 >seq16268 Length=14456 Score = 107 bits (118), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 6/204 (3%) Strand=Plus/Plus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTC---GCGCGTGCCGATC 1254404 || ||||| ||| ||| | || || || || || ||||| || || |||| || Sbjct 9406 GCAAGTTCACCGGGCAGCAATAGACGAACAGCAGTTTGGATTTCTCTGCTCGTG---ATG 9462 Query 1254405 GTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATG 1254464 || |||||||| |||| || ||||||| || ||||| | | || || |||| || Sbjct 9463 GTTGACCGCTTGTTGTAGTGGGCAAGACGGCTGGACTCGGCGGCAATACGCTCGAAAATA 9522 Query 1254465 TCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGC 1254524 ||||| |||||||||||||||| |||||||| ||| |||||| || ||||| || Sbjct 9523 TCGTTCACAAACGAGTTCATGATCGACATCGCCTTCGAGGAGATACCGGTATCGGGATGA 9582 Query 1254525 ACCTGCTTGAGCACCTTGTAGATG 1254548 ||||| | ||||||||||||| Sbjct 9583 ACCTGGCGCAACACCTTGTAGATG 9606 >seq1323 Length=72209 Score = 107 bits (118), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 6/204 (3%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTC---GCGCGTGCCGATC 1254404 || ||||| ||| ||| | || || || || || ||||| || || |||| || Sbjct 28340 GCAAGTTCACCGGGCAGCAATAGACGAACAGCAGTTTGGATTTCTCTGCTCGTG---ATG 28284 Query 1254405 GTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATG 1254464 || |||||||| |||| || ||||||| || ||||| | | || || |||| || Sbjct 28283 GTTGACCGCTTGTTGTAGTGGGCAAGACGGCTGGACTCGGCGGCAATACGCTCGAAAATA 28224 Query 1254465 TCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGC 1254524 ||||| |||||||||||||||| |||||||| ||| |||||| || ||||| || Sbjct 28223 TCGTTCACAAACGAGTTCATGATCGACATCGCCTTCGAGGAGATACCGGTATCGGGATGA 28164 Query 1254525 ACCTGCTTGAGCACCTTGTAGATG 1254548 ||||| | ||||||||||||| Sbjct 28163 ACCTGGCGCAACACCTTGTAGATG 28140 >seq2508 Length=53929 Score = 100 bits (110), Expect = 3e-15 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| || || ||||| || | ||| || || |||| | |||||||||||||| ||||| Sbjct 45288 ACCCTCATCTCGACTAATGAGTTCATTACTGAAGGTTAAACCGGGCATGAGGCCTCGCTT 45347 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||||| || || ||| || ||||||||||| | |||||| || || ||| | Sbjct 45348 TTTGAGCCAAAATATCGCAGCGAAGCTTCCCGAGAAAAATACGCCCTCAACTGCTGCATA 45407 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTG 869323 | | | || | ||| |||||||| Sbjct 45408 GGCCACCAGTCTCTCCCCAAAGGTG 45432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6100074825893311