Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq4653 134 1e-26 seq13344 113 4e-20 seq18034 100 3e-16 >seq4653 Length=38373 Score = 134 bits (148), Expect = 1e-26 Identities = 170/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | || ||| | || || ||||| ||||| |||||||| ||||| | Sbjct 8832 GATGCAGATTTTCGTGAAGACGTTGACTGGCAAAACCATTACTCTCGAAGTTGAAGCTAG 8773 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| || | |||| || ||| || || || || |||||||| || ||||| ||||| Sbjct 8772 CGATACCATCGAAAACGTGAAAGCTAAAATTCAGGATAAAGAAGGCATCCCTCCAGATCA 8713 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTAT 24880 |||||| |||| ||||| || || ||| |||| ||| ||| | || | || ||||| Sbjct 8712 ACAACGGCTGATATTTGCTGGTAAGCAGTTGGAAGATGGTCG-CACAC-TTTCTGATTAC 8655 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| || |||||||| || ||||| | ||| | || ||||||| || Sbjct 8654 AACATACAGAAGGAATCTACGCTACATCTCGTGCTCCGTCTGCGCGGTGG 8605 Score = 134 bits (148), Expect = 1e-26 Identities = 170/231 (74%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | |||||| | || |||||||| || || || ||||| ||||| | Sbjct 9287 ATGCAAATTTTTGTCAAAACGTTGACAGGTAAAACAATAACTCTGGAAGTGGAAGCAAGT 9228 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || || || |||||||| || ||||| || || || ||||| Sbjct 9227 GATACGATTGAAAACGTGAAGGCTAAAATCCAAGATAAGGAAGGTATCCCACCGGATCAG 9168 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACAT-GTCAGATTAT 24880 ||||| |||| ||||| || || ||||| |||||| ||| |||| ||| |||||| Sbjct 9167 CAACGACTGATTTTTGCTGGCAAGCAGCTCGAGGATGGTCGC---ACATTGTCCGATTAT 9111 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| ||||| || || || || ||| ||||| | || ||||| || ||| Sbjct 9110 AACATCCAAAAAGAGTCTACGCTGCACCTGGTGCTCCGTTTGCGAGGTGGC 9060 >seq13344 Length=17380 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 |||||||| ||||| |||| || | || || || || || ||||| || |||||| | Sbjct 12190 ACGATGCAAATCTTCGTTAAGACCTTGACTGGGAAGACCATCACGCTTGAGGTAGAACCT 12131 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | || | |||||| ||| || ||||| ||||||||||| ||||| ||| Sbjct 12130 TCGGACACCATCGAGAATGTAAAAGCAAAAATTCAAGATAAAGAAGGAATTCCTCCTGAT 12071 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 ||||| ||| | || || || || || ||||| || || ||| | || || || Sbjct 12070 CAACAGCGTCTAATTTTCGCTGGAAAGCAGCTCGAAGACGGTCGAACGCTCTCGGACTAC 12011 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| || ||||| || ||||| || | || |||| |||| || || Sbjct 12010 AACATACAGAAGGAGTCTACACTTCATCTCGTTCTGCGTCTGCGAGGTGG 11961 >seq18034 Length=13003 Score = 100 bits (110), Expect = 3e-16 Identities = 129/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 139074 GACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAAT 139133 |||| |||| || || | ||||| || || | ||| || || || || || ||||| Sbjct 8878 GACAGAAATAGACGCCAGATTGCAAACGGCAATTTCTTCTGGTGAACTATACTCCACAAT 8937 Query 139134 TTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTT 139193 ||| | |||| |||||| ||||||||||| || | || ||||| ||||| || ||||| Sbjct 8938 TTCAGTGCACAGATTACTGCACTTGATCGTTCCCAGGTTCTGTTGGTTGCTCTTGCGGTT 8997 Query 139194 ACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATG 139251 || || || ||||||||||| |||| | || ||||| | ||| | | |||||| Sbjct 8998 GCATGCGTCCTTGTAAAGCATGAACGGATTACCCGTTTCAATTTGAGCTTGAATAATG 9055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449413493311240