Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq16268 132 8e-25 seq1323 132 8e-25 seq27126 120 5e-21 seq8840 105 1e-16 seq2508 100 4e-15 seq17164 93.3 7e-13 seq25925 91.5 2e-12 seq68 89.7 8e-12 >seq16268 Length=14456 Score = 132 bits (146), Expect = 8e-25 Identities = 174/241 (72%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || ||||| || ||||| || ||||||||| | || ||||| ||| ||| Sbjct 9362 TGTACTTGGTCACCGCCTTCGTGCCCTCAGAAACGGCGTGCTTCGCAAGTTCACCGGGCA 9421 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || || || || ||||| || | | | ||| || |||||||| | Sbjct 9422 GCAATAGACGAACAGCAGTTTGGATTTCTCTGCTCGTGATGGTTGACCGCTTGTTGTAGT 9481 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || |||| || ||||| | | || || |||| || ||||| ||||||||||||| Sbjct 9482 GGGCAAGACGGCTGGACTCGGCGGCAATACGCTCGAAAATATCGTTCACAAACGAGTTCA 9541 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||||||||| || |||||| || ||||| || ||||| | |||||||| Sbjct 9542 TGATCGACATCGCCTTCGAGGAGATACCGGTATCGGGATGAACCTGGCGCAACACCTTGT 9601 Query 1485710 A 1485710 | Sbjct 9602 A 9602 >seq1323 Length=72209 Score = 132 bits (146), Expect = 8e-25 Identities = 174/241 (72%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || ||||| || ||||| || ||||||||| | || ||||| ||| ||| Sbjct 28384 TGTACTTGGTCACCGCCTTCGTGCCCTCAGAAACGGCGTGCTTCGCAAGTTCACCGGGCA 28325 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || || || || ||||| || | | | ||| || |||||||| | Sbjct 28324 GCAATAGACGAACAGCAGTTTGGATTTCTCTGCTCGTGATGGTTGACCGCTTGTTGTAGT 28265 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || |||| || ||||| | | || || |||| || ||||| ||||||||||||| Sbjct 28264 GGGCAAGACGGCTGGACTCGGCGGCAATACGCTCGAAAATATCGTTCACAAACGAGTTCA 28205 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||||||||| || |||||| || ||||| || ||||| | |||||||| Sbjct 28204 TGATCGACATCGCCTTCGAGGAGATACCGGTATCGGGATGAACCTGGCGCAACACCTTGT 28145 Query 1485710 A 1485710 | Sbjct 28144 A 28144 >seq27126 Length=7760 Score = 120 bits (132), Expect = 5e-21 Identities = 162/226 (72%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||| || |||||||||||||| |||||||| ||| |||||| || || ||| Sbjct 6881 TGTATTTGGTCACCGCCTTGGTACCCTCGGAGACGGCATGCTTGGCCAACTCACCAGGCA 6940 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || || || || |||| || | | | ||| || |||||| || | Sbjct 6941 ACAGAAGACGAACTGCAGTTTGGACTTCTCTGCTAGTGATGGTCGAGCGCTTATTGTAGT 7000 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || || | | ||||| | | ||||| || | ||||| ||||| |||||||||| Sbjct 7001 GAGCAAGACGACTCGACTCGGAGGCAATGCGTTCAAAGATGTCATTGACGAACGAGTTCA 7060 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTG 1485695 |||| ||||||| ||| |||||| || |||||| || ||||| Sbjct 7061 TGATGGACATCGCTTTCGAGGAGATACCGGTGTCGGGATGGACCTG 7106 >seq8840 Length=24644 Score = 105 bits (116), Expect = 1e-16 Identities = 159/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||| || |||||||| |||| |||||||| ||| |||||| || ||| ||| Sbjct 12104 TGTATTTGGTCACCGCCTTGGTGTCCTCGGAGACGGCATGCTTGGCCAACTCACCGGGCA 12045 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || || || | |||||||| | | | ||| || ||||||||| | Sbjct 12044 ACAGAAGACGAACTGCAATTTGGATCTCTCTGTTCGTGATGGTCGAGCGCTTGTTGTAGT 11985 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || |||| | ||||| | | || || || | || || ||||| |||||||||| Sbjct 11984 GAGCAAGACGGCTCGACTCGGAGGCAATACGTTCAAAGATCTCATTGACGAACGAGTTCA 11925 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTG 1485695 |||| | ||| | ||| |||||| || |||||| || || || Sbjct 11924 TGATAGGCATGGCTTTCGAGGAGATACCGGTGTCGGGATGAACATG 11879 >seq2508 Length=53929 Score = 100 bits (110), Expect = 4e-15 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| || || ||||| || | ||| || || ||| | |||||||||||||| ||||| Sbjct 45288 ACCCTCATCTCGACTAATGAGTTCATTACTGAAGGTTAAACCGGGCATGAGGCCTCGCTT 45347 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||||| || ||| ||| || ||||||||||| | |||||| || || ||| | Sbjct 45348 TTTGAGCCAAAATATCGCAGCGAAGCTTCCCGAGAAAAATACGCCCTCAACTGCTGCATA 45407 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTG 794484 | | || || | ||| |||| ||| Sbjct 45408 GGCCACCAGTCTCTCCCCAAAGGTG 45432 >seq17164 Length=13668 Score = 93.3 bits (102), Expect = 7e-13 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || |||||||||||||| || ||||| ||| || ||| || || ||| Sbjct 2960 TGTACTTGGTCACCGCCTTGGTACCCTCGGATACGGCATGCTTGACCAACTCACCAGGCA 3019 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || | || || | |||||||| | | | ||| || ||||||||| | Sbjct 3020 ACAGAAGACAAACTGCAGCTTGGATCTCTCTGCTCGTGATGGTCGAGCGCTTGTTGTAGT 3079 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || |||| | ||| | | | || || || | ||||| ||||| |||||||||| Sbjct 3080 GAGCAAGACGGCTTGACTCTGAGACAATACGCTCAAAGATGTCATTGACGAACGAGTTCA 3139 Query 1485650 TGATCGACATCGATTT 1485665 |||| | ||| | ||| Sbjct 3140 TGATGGGCATGGCTTT 3155 >seq25925 Length=8282 Score = 91.5 bits (100), Expect = 2e-12 Identities = 166/242 (69%), Gaps = 1/242 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACG-GCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGC 1485528 |||||||||| || ||||| || ||||| || ||||||||| | || ||||| ||| || Sbjct 460 TGTACTTGGTCACCCGCCTTCGTGCCCTCAGAAACGGCGTGCTTCGCAAGTTCACCGGGC 401 Query 1485529 ATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTG 1485588 | | | | || || || ||| | || | | | ||| || |||||||| | Sbjct 400 AGCAATGGACAAACAGCAGTTTGGGTTTCTCTGCTCGTGATGGTTGACCGCTTGTTGTAG 341 Query 1485589 CGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | || || |||| | ||||||| | || | |||| || |||| | |||||||||| Sbjct 340 TGGGCAAGACGGCTAGACTCGGTGGCAATATGCTCGAAAATATCGTCCATAAACGAGTTC 281 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||||||| ||| || |||||| || ||||| || || || | ||||||| Sbjct 280 ATGATCGACGTCGCCTTCGAGGAGATACCGGTATCGGGATGGACTTGGCGTAACACCTTG 221 Query 1485709 TA 1485710 || Sbjct 220 TA 219 >seq68 Length=180577 Score = 89.7 bits (98), Expect = 8e-12 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1485474 CTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGAT 1485533 |||||| || || || || ||||| || ||||||||| | || ||||| ||| ||| | Sbjct 16734 CTTGGTCACCGCATTCGTGCCCTCAGAAACGGCGTGCGTTGCAAGTTCACCGGGCAGTAA 16793 Query 1485534 CAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGC 1485593 || || | || || ||||| || | | | ||| || ||| |||| | | || Sbjct 16794 TAGACGAATAGCAGTTTGGATTTCTCTGCTCATGATGGTTGACCGCCTGTTTCAGTGGGC 16853 Query 1485594 CAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGAT 1485653 || | || ||||| | | ||||| |||| || ||||| |||||||||||||||| Sbjct 16854 AAGATGTTTGGACTCGGCGTCAATGCGCTCGAAAATATCGTTCGCAAACGAGTTCATGAT 16913 Query 1485654 CGACATCGATTTGTTGGAGATGCC 1485677 |||||||| || |||||| || Sbjct 16914 CGACATCGCCTTCGAGGAGATACC 16937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7907089358665437