Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq4653 113 3e-20 >seq4653 Length=38373 Score = 113 bits (124), Expect = 3e-20 Identities = 142/193 (74%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 |||||||||||||| ||||| || | |||| |||| || | ||||||||| ||||| Sbjct 9325 TCCTTCTGAATGTTGTAGTCTGACAACGTGCGACCATCCTCTAATTGCTTTCCAGCGAAA 9384 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| || ||||| ||| |||| | || ||||| || | |||||| || || || Sbjct 9385 ATCAAACGCTGCTGATCTGGCGGGATTCCTTCCTTATCTTGTATTTTCGCCTTCAC--AT 9442 Query 34907 GCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTA 34964 || |||| || |||| || || || | ||| || ||||| ||||| || ||||| | Sbjct 9443 TCTCAATCGTGTCGCTGGCTTCAACCTCGAGGGTAATTGTCTTGCCCGTAAGAGTCTTCA 9502 Query 34965 CAAAGATCTGCAT 34977 |||| |||||||| Sbjct 9503 CAAAAATCTGCAT 9515 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | || ||| || || |||||||| || || | |||| |||| Sbjct 9076 AGCACCAGGTGCAGCGTAGACTCTTTTTGGATGTTATAATCGGACAATGTGCGACCATCC 9135 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || || || |||||||||||||| || | || | || ||||| || Sbjct 9136 TCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGCTGATCCGGTGGGATACCTTCCTTATCT 9195 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| || ||| | | |||| ||| | || || || || | ||||| || Sbjct 9196 TGGATTTTAGCCTTCACGTTTTCAATCGTATCACTTGCTTCCACTTCCAGAGTTATTGTT 9255 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || || | || || ||||| || |||||| Sbjct 9256 TTACCTGTCAACGTTTTGACAAAAATTTGCATG 9288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325351103775377