Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1732 356 2e-92 seq8654 152 4e-31 seq6236 102 6e-16 >seq1732 Length=63940 Score = 356 bits (394), Expect = 2e-92 Identities = 968/1463 (66%), Gaps = 28/1463 (2%) Strand=Plus/Plus Query 281431 CACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCT 281490 |||||| | || || || ||||| | |||||| || || || || || || || || || Sbjct 45703 CACATTCAATATCCCGTTCGCATCAATATCAAAGGTCACCTCGATCTGTGGCACACCCCT 45762 Query 281491 CTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAA 281550 | | || ||||||| ||| | | |||| |||||| ||| ||||| || || | Sbjct 45763 CGGTGCTGGTGGGAATCCTGATAGTTCAAATTTTCCCAATAAATTGTTATCCTTTGTCAT 45822 Query 281551 TTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGT 281610 ||||| |||||| | | ||| || ||| | ||||||||| || || || || Sbjct 45823 CGCGCGTTCCCCCTCGTACACTTGAATTAAAACACCTTGTTGATTATCCGAGTACGTGGT 45882 Query 281611 AAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAA 281669 ||| | | || ||| ||| ||||| ||||| || | | || | |||||| | Sbjct 45883 AAA-AGTTTGTGTTTGTTTTGTCGGAATAGTTGTATTCCGTTTGATTAGTGGGGTCATCA 45941 Query 281670 TACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTT- 281728 ||||| || ||||| || || || || || ||||| ||||| | || ||| ||| | Sbjct 45942 CGCCACCGGCGGTTTCCAATCCCAGGGACAGCGGAGTCACATCGAGTA--ACAGTATGTC 45999 Query 281729 -TGAAGTTTTTCATCAGTT-TGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATG 281786 |||| || | | || | ||| ||||| |||||||||| || || || || | Sbjct 46000 CTGAACCACGTC-TGATTTGTCTCCACTCAGAATCGCTGCTTGAACTGCTGCGCCGTACG 46058 Query 281787 CAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT-TGAA 281845 | || ||||| || ||||| | | || || |||| || |||||||| |||| || | Sbjct 46059 CGACCGCTTCGTCCGGATTGATGGATTTGTTCAGTTCCTTTCCATTGAAGAAATCCTGCA 46118 Query 281846 AGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACC 281905 | || || | | || ||||| | || ||| || || || | |||||||| || | | Sbjct 46119 ATAACTTCTGG-ATTTTTGGAATCCTAGTTGAACCACCCACAAGGACAATTTCGTGAATC 46177 Query 281906 TGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTA 281965 || | |||||||||||| | ||| ||| |||| || || || || || || Sbjct 46178 TGGGTTTTATCCAGTTTAGCATCACGTAAGGCTTTCTCGACCGGATCCAGTGTGCTTCGG 46237 Query 281966 AACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATT 282025 |||| || | || | ||| || ||| || | || | ||| | |||| ||| Sbjct 46238 AACAGATCCGCGCACAATTCCTCAAATCGGGCACGGGTGATTGTGGTGTAGAAATCGATT 46297 Query 282026 CCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTA 282085 ||||||||||| || |||| ||| | | | ||| | | | |||| || || Sbjct 46298 CCTTCGAACAATGAGTCAATTTCCACATTGGCTTGTGCGCTGGCACTCAGTGTGCGCTTG 46357 Query 282086 GCACGTTCACATGCTGTCCTTAGTCTTCGTAAGG--CTTTTGCTGATTGATTCAAATCTG 282143 || |||||||| ||||||| ||| | ||| | | | |||| | ||| || |||| Sbjct 46358 GCTCGTTCACAAGCTGTCCGTAGACGTCGAAGCGAACGTTTGTTATCTGA--CAGATCTT 46415 Query 282144 TTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACGATTATCAAAATC 282201 |||| | ||||| || || || | ||| | ||| | || | |||| | || ||||| Sbjct 46416 TTTTGTTTTTTCGTTTAAATTCCTGCACAAA--ATGACTGACTAAACGACTGTCGAAATC 46473 Query 282202 TTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAG 282261 |||||| ||||| | |||| || | || | | || | || | || ||||| | Sbjct 46474 TTCACCGCCCAAATGTGTATCACCCGCGGTGGACTTGACCTCAAATATGCCCTCTTCCAT 46533 Query 282262 AGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTC 282321 | ||| | || ||||| || |||||||||| || ||||| || ||||| ||| Sbjct 46534 GGCCAATACAGACACATCGAATGTACCACCACCCAGGTCGAAAATCAGAACATTGCGTTC 46593 Query 282322 TTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 282381 | | |||||||| | ||||||||| | |||||||| |||||||| ||||| || Sbjct 46594 GGTCCCACTTTTTTTATCCAAACCATACGCGATCGCAGCAGCTGTTGGTTCGTTAATGAT 46653 Query 282382 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 282441 ||| || ||||| | |||||||||| | || |||||||| |||||||||||||| || Sbjct 46654 TCTTAACACATTCAAACCAGCAATTGTGCCAGCATCTTTTGTGGCTTGTCTTTGACTGTC 46713 Query 282442 GTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCT 282501 |||||||| || || || ||||| || ||||||||| | | |||| ||| || Sbjct 46714 ATTAAAATAAGCCGGCACGGTAATCACACTATCTGTTACCGTTCTACCAAGATACGCCTC 46773 Query 282502 TGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG---AGAATATTG 282558 ||||||| |||||| | || | ||| ||||| || | ||| || | || ||| Sbjct 46774 GGCTGTTTCACGCATTTTCATCAACACCATGGATGATATCTCTTCCGGGAAAAAAGATT- 46832 Query 282559 CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTT 282618 ||| | ||| ||| || | | | |||||| | | |||| ||| ||| | Sbjct 46833 -TTGTCTCTCCCTTG-TATTCGACCTGTATTTTTGGTTTTCCAGCCACATCAATCACTGT 46890 Query 282619 AAATGGCCAATATTTCATATCTGATTGAACACTTTGG--TCATTAAAATCTCTACCAATT 282676 || ||||| | ||| ||| | | |||| || |||| ||| | ||| || Sbjct 46891 GAACGGCCAGTGTTTTCGATC--CTCGGCCACTGCGGGATCATCAAAGCGACGACCGATC 46948 Query 282677 AATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCA 282736 | ||||| || || || | |||||| || ||||| | || | |||| | | || || Sbjct 46949 AGACGTTTGGCGTCGAACACAGTATTTGTGGGATTCATAGCCACCTGATTTCTCGCAGCG 47008 Query 282737 TCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCT 282796 ||||||||||| | || | || || |||| ||||| || || || ||||| || Sbjct 47009 TCTCCAATCAGTCGCTCGTTGTCCGTGAATGCCACATAGCTCGGTGTAGTTCGATTGCCC 47068 Query 282797 TGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTT 282856 || ||||| || |||||||| || || || |||| | || || ||||| | || Sbjct 47069 TGGTCATTTGCGATAATTTCCACCTTGCCGTTTTTGAAAACTCCCACACATGAGTAGGTG 47128 Query 282857 GTTCCTAAATCAATACCAATAGC 282879 || |||| ||| || ||||| || Sbjct 47129 GTGCCTAGATCTATGCCAATTGC 47151 >seq8654 Length=25055 Score = 152 bits (168), Expect = 4e-31 Identities = 481/737 (65%), Gaps = 14/737 (2%) Strand=Plus/Minus Query 282146 TTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACGATTATCAAAATCTT 282203 ||||| || |||||||| |||| || | ||| | || | |||||| || ||||||| Sbjct 24668 TTATACTTCCTCTTGAACTCTTGAATGAA--ATGACTAACCATACGATTGTCGAAATCTT 24611 Query 282204 CACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAG 282263 | || || | | || | |||| |||| | |||| ||| | |||||| || | | Sbjct 24610 CGCCACCAAGATGTGTGTCACCTGCAGTAGACTTCACTTCGAAGACTCCATCCTCGATGG 24551 Query 282264 ACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTT 282323 | || | ||||| ||| || || |||| |||||||||||| || || ||| Sbjct 24550 TAAGAATGGATACATCGAAGGTGCCGCCTCCCAAATCAAAAATAAGCACGTTACGTTCCC 24491 Query 282324 TGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTC 282383 | ||||| || | ||||| || | ||||||||||| ||||| || || || | Sbjct 24490 CACCAACCTTTTTGTCCAATCCATAGGCTATGGCAGCAGCAGTGGGTTCGTTGATTATGC 24431 Query 282384 TCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGT 282443 || ||| ||||||||||| || || | ||| ||||| ||||| || || ||||| Sbjct 24430 GCAGAACGTTAAGACCAGCGATAGCACCGGAATCCTTAGTTGCTTGCCTCTGGCTATCGT 24371 Query 282444 TAAAATATGCAGGAACAGTAATAACGGCATCTGTTA-CTTCTTTTCCA-ATATAAGCGCT 282501 | || || || || ||||| || || || || || | |||||| ||| ||| | || Sbjct 24370 TGAAGTAGGCCGGGACAGTGATCACAGCGTCCGTGACCTTCTTACCCAGGTAT---CCCT 24314 Query 282502 -TGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTG--GAGAATATTG 282558 || || |||||||| |||| ||||| || || || | ||| | |||||| || Sbjct 24313 CAGCAACTTCCTTCATTTTCATTAAGATCATGGAAGATATCTCTTCAGCCGAGAATGTT- 24255 Query 282559 CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTT 282618 || ||| || || ||| || | || |||| | | || |||| Sbjct 24254 -TTCATCTCACCTTTGTACTCCACTCGAATCTTCGGCTTATCATTCTCGGAGATCACTTC 24196 Query 282619 AAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAA 282678 ||| | ||| | || ||| | || ||||| | || | || || | Sbjct 24195 AAACGACCAGTGCTTGCGATCGGCGGTGACTGAGGGGTCACTGAATCGGCGTCCGATGAG 24136 Query 282679 TCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATC 282738 || || || ||||| | || ||| ||||||| | || |||| | ||| || ||||| Sbjct 24135 ACGCTTCGCGTCAAAGACGGTGTTGCTTGGATTCATGGCCACTTGGTTTTTCGCGGCATC 24076 Query 282739 TCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTG 282798 ||||| || |||| || || ||||| | ||||| || || ||||| |||||||| Sbjct 24075 ACCAATGAGTCGTTCAGTGTCCGTAAAAGCCACATAACTGGGTGTCGTGCGGTTACCTTG 24016 Query 282799 ATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGT 282858 ||||| |||||||| ||||| || || | || | ||||| || || | || || Sbjct 24015 GTCATTGGCAATAATCTCAACCTTCCCGTGCTGGAAAACACCGACGCAGGAGTAGGTCGT 23956 Query 282859 TCCTAAATCAATACCAA 282875 || |||||||| |||| Sbjct 23955 GCCCAAATCAATCCCAA 23939 >seq6236 Length=31905 Score = 102 bits (112), Expect = 6e-16 Identities = 129/175 (74%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 432288 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACGT 432347 ||||||| ||||||||| |||| || |||||||||| ||||| ||| | ||||||||| Sbjct 15430 GGTAAAGCTGGTCGTATTCGAGGCAACCTGATGGGAAAACGTGTGGATTTCTCTGCACGT 15371 Query 432348 ACAGTTATTACTTCTGATCCTAATATTGCTCTCA-ATGAAGTTGGTGTTCCTCTCATTAT 432406 ||||| || || | ||||| ||| ||| || | | |||| |||||||| | || || Sbjct 15370 ACAGTCATAACAGCCGATCCGAAT-TTGAACTTAGACCAAGTCGGTGTTCCACGCACAAT 15312 Query 432407 TGCGAAAAATCTTACTTTTGACGAAATTGTAACAGAACATAATATTGATTATTTG 432461 || ||||||| || | | |||| || || || ||||||||| ||||| Sbjct 15311 CGCACAAAATCTCACCTATCCGGAAACGGTCACGCAATTCAATATTGATCATTTG 15257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3736404088486758