Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq13344 132 5e-26 seq4653 113 4e-20 seq18034 100 3e-16 >seq13344 Length=17380 Score = 132 bits (146), Expect = 5e-26 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || ||||| | ||||| ||| | ||||| |||||| || || ||||||||||| | | Sbjct 11961 CCACCTCGCAGACGCAGAACGAGATGAAGTGTAGACTCCTTCTGTATGTTGTAGT--CCG 12018 Query 137245 ATTGTGCTCGA--GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 137302 | | | |||| ||||||||| || || ||||| | || ||||| || ||||| |||| Sbjct 12019 AGAGCGTTCGACCGTCTTCGAGCTGCTTTCCAGCGAAAATTAGACGCTGTTGATCAGGAG 12078 Query 137303 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTA 137362 | || |||||||| || ||||||| ||||| | || | ||||| | ||||||| Sbjct 12079 GAATTCCTTCTTTATCTTGAATTTTTGCTTTTACATTCTCGATGGTGTCCGAAGGTTCTA 12138 Query 137363 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 | |||| || | ||||| || ||||| || || ||||| |||||||| Sbjct 12139 CCTCAAGCGTGATGGTCTTCCCAGTCAAGGTCTTAACGAAGATTTGCAT 12187 >seq4653 Length=38373 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 |||||||| || |||||||||||||| | ||||| ||||| | || |||||| Sbjct 8635 GTAGATTCCTTCTGTATGTTGTAATCAGAAAGTGTGCGACCATCTTCCAACTGCTTACCA 8694 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| | ||||| ||||| ||||| ||||| ||||||||||| || |||||| ||| Sbjct 8695 GCAAATATCAGCCGTTGTTGATCTGGAGGGATGCCTTCTTTATCCTGAATTTTAGCTTTC 8754 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | ||| | || || | | ||| ||||| | ||| | || ||||| ||||| || Sbjct 8755 ACGTTTTCGATGGTATCGCTAGCTTCAACTTCGAGAGTAATGGTTTTGCCAGTCAACGTC 8814 Query 137395 TTTACGAATATTTGCAT 137411 || ||||| || ||||| Sbjct 8815 TTCACGAAAATCTGCAT 8831 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| ||||| ||||| | || | || | ||||| |||||||| ||||| |||||| Sbjct 9060 GCCACCTCGCAAACGGAGCACCAGGTGCAGCGTAGACTCTTTTTGGATGTTATAATCGGA 9119 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || ||||| || ||||| || || |||||| | ||||| ||||||||||| || || Sbjct 9120 CAATGTGCGACCATCCTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGCTGATCCGGTGG 9179 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| || || ||||| || | | ||| | ||| || | | ||| || Sbjct 9180 GATACCTTCCTTATCTTGGATTTTAGCCTTCACGTTTTCAATCGTATCACTTGCTTCCAC 9239 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||| | ||| | || || || ||||| ||||| || || |||||||| Sbjct 9240 TTCCAGAGTTATTGTTTTACCTGTCAACGTTTTGACAAAAATTTGCAT 9287 >seq18034 Length=13003 Score = 100 bits (110), Expect = 3e-16 Identities = 131/179 (73%), Gaps = 2/179 (1%) Strand=Plus/Plus Query 151279 GACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACTAT 151338 ||| | ||| ||||| ||||| || |||||| |||| || || | | ||| | || || Sbjct 8878 GACAGAAATAGACGCCAGATTGCAAACGGCAATTTCTTCTGGTGAACTATACTCCACAAT 8937 Query 151339 TTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACT-TTGATTGCTTTTGCGGT 151397 ||| | |||| ||| ||||| || ||| ||| || | || ||| ||||| ||||||| Sbjct 8938 TTCAGTGCACAGATTACTGCACTTGATCGTTCC-CAGGTTCTGTTGGTTGCTCTTGCGGT 8996 Query 151398 TGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTCTATAATG 151456 |||| ||||||||||| | |||| |||| | || ||||| |||| || |||||| Sbjct 8997 TGCATGCGTCCTTGTAAAGCATGAACGGATTACCCGTTTCAATTTGAGCTTGAATAATG 9055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488018308335600