Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq13344 188 1e-42 seq4653 185 2e-41 >seq13344 Length=17380 Score = 188 bits (208), Expect = 1e-42 Identities = 179/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||| || ||||||||| | || || ||||| || |||||||| || || || | Sbjct 11959 TACCACCTCGCAGACGCAGAACGAGATGAAGTGTAGACTCCTTCTGTATGTTGTAGTCCG 12018 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || ||| ||||||||| || || |||||||| || ||||| | |||||||| |||| Sbjct 12019 AGAGCGTTCGACCGTCTTCGAGCTGCTTTCCAGCGAAAATTAGACGCTGTTGATCAGGAG 12078 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | |||||||| ||||||||||| |||||||||||||| || || || || |||||||| Sbjct 12079 GAATTCCTTCTTTATCTTGAATTTTTGCTTTTACATTCTCGATGGTGTCCGAAGGTTCTA 12138 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || ||||| || ||||| ||||| || || || ||||| Sbjct 12139 CCTCAAGCGTGATGGTCTTCCCAGTCAAGGTCTTAACGAAGATTTGCAT 12187 >seq4653 Length=38373 Score = 185 bits (204), Expect = 2e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||| |||||| || || | |||||| ||||| ||||| || || |||||||| || Sbjct 9061 CCACCTCGCAAACGGAGCACCAGGTGCAGCGTAGACTCTTTTTGGATGTTATAATCGGAC 9120 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | ||| || || || || || |||||||| || |||| ||| ||||| || || Sbjct 9121 AATGTGCGACCATCCTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGCTGATCCGGTGGG 9180 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||||||||| || || || || || ||||||||||||||| | | ||| ||| Sbjct 9181 ATACCTTCCTTATCTTGGATTTTAGCCTTCACGTTTTCAATCGTATCACTTGCTTCCACT 9240 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| |||||| || || ||||||||||| || ||||| || ||||| Sbjct 9241 TCCAGAGTTATTGTTTTACCTGTCAACGTTTTGACAAAAATTTGCAT 9287 Score = 178 bits (196), Expect = 3e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| || | || ||| || || | || || |||||||| |||||||| || |||||||| Sbjct 8604 ACCACCGCGCAGACGGAGCACGAGATGTAGCGTAGATTCCTTCTGTATGTTGTAATCAGA 8663 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | ||| ||||| | || || |||||||| || || | ||||||||||||||| Sbjct 8664 AAGTGTGCGACCATCTTCCAACTGCTTACCAGCAAATATCAGCCGTTGTTGATCTGGAGG 8723 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || ||||| ||||| ||||| || ||||| || ||||| || ||||| ||| ||| || Sbjct 8724 GATGCCTTCTTTATCCTGAATTTTAGCTTTCACGTTTTCGATGGTATCGCTAGCTTCAAC 8783 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||| | ||| || || ||||| ||||||||||| || || |||||||| Sbjct 8784 TTCGAGAGTAATGGTTTTGCCAGTCAACGTCTTCACGAAAATCTGCAT 8831 Score = 172 bits (190), Expect = 1e-37 Identities = 167/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 |||| || || || || |||||||| ||||| ||||| |||||||||| | | | ||| Sbjct 8845 CGCAATACCAAATGAAGCGTAGATTCCTTCTGGATATTGTAATCAGATAAAGTACGACCA 8904 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || || ||||| || || || |||| || || ||||| || || ||||||||| Sbjct 8905 TCTTCAAGCTGCTTTCCTGCGAAAATGAGTCGCTGCTGGTCTGGTGGAATGCCTTCCTTA 8964 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| |||||||| ||||| || |||||| ||| ||| || ||||| || || Sbjct 8965 TCCTGGATCTTAGCTTTTACGTTTTCGATAGTATCACTAGCTTCAACCTCCAACGTAATA 9024 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || |||| || || ||||| |||||||| Sbjct 9025 GTCTTTCCGGTCAGAGTTTTCACAAAAATCTGCAT 9059 Score = 131 bits (144), Expect = 3e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 |||| ||| | |||| || ||||| ||||| || || || || || | | | ||| Sbjct 9301 CGCAAAACAAGATGCAATGTGGATTCCTTCTGAATGTTGTAGTCTGACAACGTGCGACCA 9360 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || |||| ||| |||||||| || || | | || |||||||| || |||||||||||| Sbjct 9361 TCCTCTAATTGCTTTCCAGCGAAAATCAAACGCTGCTGATCTGGCGGGATTCCTTCCTTA 9420 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||| || || || || ||||| |||||||| || | | ||| || || | || || Sbjct 9421 TCTTGTATTTTCGCCTTCACATTCTCAATCGTGTCGCTGGCTTCAACCTCGAGGGTAATT 9480 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || | ||||| ||||| |||||||| Sbjct 9481 GTCTTGCCCGTAAGAGTCTTCACAAAAATCTGCAT 9515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980744305042137