Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq18034 122 8e-23 seq4653 107 2e-18 seq13344 87.8 2e-12 seq2508 82.4 7e-11 >seq18034 Length=13003 Score = 122 bits (134), Expect = 8e-23 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 148824 ATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCG 148883 ||||| || |||||||| ||||| | || || || | || ||||| || || || | | Sbjct 8885 ATAGACGCCAGATTGCAAACGGCAATTTCTTCTGGTGAACTATACTCCACAATTTCAGTG 8944 Query 148884 CACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCG 148943 |||||||| ||||| |||||| |||| ||||| ||| |||||||||| |||||| ||| Sbjct 8945 CACAGATTACTGCACTTGATCGTTCCCAGGTTCTGTTGGTTGCTCTTGCGGTTGCATGCG 9004 Query 148944 TCCTTGTACAGCATGTACGG 148963 |||||||| |||||| |||| Sbjct 9005 TCCTTGTAAAGCATGAACGG 9024 >seq4653 Length=38373 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| || ||||| || ||||| || || |||| ||| | ||||| | ||||| || Sbjct 9319 GTGGATTCCTTCTGAATGTTGTAGTCTGACAACGTGCGACCA-TCCTCTAATTGCTTTCC 9377 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| | |||||||| || || ||||| |||||||| || || || ||| Sbjct 9378 AGCGAAAATCAAACGCTGCTGATCTGGCGGGATTCCTTCCTTATCTTGTATTTTCGCCTT 9437 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| ||||||| ||| || || |||| ||| | || ||||| || ||||| Sbjct 9438 CACATTCTCAATCGTGTCGCTGGCTTCAACCTCGAGGGTAATTGTCTTGCCCGTAAGAGT 9497 Query 133643 TTTTACGAAAATCTGCAT 133660 || || ||||||||||| Sbjct 9498 CTTCACAAAAATCTGCAT 9515 Score = 100 bits (110), Expect = 3e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || |||||||| || || || |||||| || ||| ||| | ||||||||||||||||| Sbjct 9091 GTAGACTCTTTTTGGATGTTATAATCGGACAATGTGCGACCA-TCCTCGAGCTGCTTGCC 9149 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || |||| || || ||||| || || ||||| |||||||| || ||| || ||| Sbjct 9150 AGCAAAAATCAGTCGTTGCTGATCCGGTGGGATACCTTCCTTATCTTGGATTTTAGCCTT 9209 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| ||| || | | ||||| || | || | ||||| || |||| || Sbjct 9210 CACGTTTTCAATCGTATCACTTGCTTCCACTTCCAGAGTTATTGTTTTACCTGTCAACGT 9269 Query 133643 TTTTACGAAAATCTGCATG 133661 ||| || ||||| |||||| Sbjct 9270 TTTGACAAAAATTTGCATG 9288 Score = 98.7 bits (108), Expect = 1e-15 Identities = 148/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || || || ||||| ||||||||||| | || ||| | || || || Sbjct 8854 AAATGAAGCGTAGATTCCTTCTGGATATTGTAATCAGATAAAGTACGACCA-TCTTCAAG 8912 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || ||| ||||||| ||||||||||| || || ||||||||||| || ||| Sbjct 8913 CTGCTTTCCTGCGAAAATGAGTCGCTGCTGGTCTGGTGGAATGCCTTCCTTATCCTGGAT 8972 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| || | | || | || || | | || || || | || | || || || Sbjct 8973 CTTAGCTTTTACGTTTTCGATAGTATCACTAGCTTCAACCTCCAACGTAATAGTCTTTCC 9032 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATG 133661 |||||||||||| || |||||||||||| Sbjct 9033 GGTCAGAGTTTTCACAAAAATCTGCATG 9060 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||||| || || || |||||||| |||||||| | ||| ||| | || || | || Sbjct 8628 ATGTAGCGTAGATTCCTTCTGTATGTTGTAATCAGAAAGTGTGCGACCA-TCTTCCAACT 8686 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || || | || ||||| || || || |||||||||||||| || || ||| | Sbjct 8687 GCTTACCAGCAAATATCAGCCGTTGTTGATCTGGAGGGATGCCTTCTTTATCC-TGAATT 8745 Query 133576 TTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || |||| | | || | || ||| | | || || |||| || | ||||||||| Sbjct 8746 TTAGCTTTCACGTTTTCGATGGTATCGCTAGCTTCAACTTCGAGAGTAATGGTTTTGCCA 8805 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || |||||||||||||| Sbjct 8806 GTCAACGTCTTCACGAAAATCTGCAT 8831 >seq13344 Length=17380 Score = 87.8 bits (96), Expect = 2e-12 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| |||||||| ||||| || | ||| ||| ||| ||||||||||| || Sbjct 11991 GTAGACTCCTTCTGTATGTTGTAGTCCGAGAGCGTTCGACC-GTCTTCGAGCTGCTTTCC 12049 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-T 133581 ||| |||| || ||||| || || ||||| || ||||| || || ||| |||||| | Sbjct 12050 AGCGAAAATTAGACGCTGTTGATCAGGAGGAATTCCTTCTTTATC-TTGAATTTTTGCTT 12108 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| | || || || || | |||| ||| || || |||| | Sbjct 12109 TTACATTCTCGATGGTGTCCGAAGGTTCTACCTCAAGCGTGATGGTCTTCCCAGTCAAGG 12168 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| || ||||| Sbjct 12169 TCTTAACGAAGATTTGCAT 12187 >seq2508 Length=53929 Score = 82.4 bits (90), Expect = 7e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 120649 AAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGC 120708 || ||||||||||| ||||| || || || || || || || || || | |||||| Sbjct 45274 AAATCCGTGTGCAGACCCTCATCTCGACTAATGAGTTCATTACTGAAGGTTAAACCGGGC 45333 Query 120709 ATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCC 120768 |||| |||| | | |||| | ||||| || || ||||| ||||| || || |||||| Sbjct 45334 ATGAGGCCTCGCTTTTTGAGCCAAAATATCGCAGCGAAGCTTCCCGAGAAAAATACGCCC 45393 Query 120769 TCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCCAC 120828 || || ||| |||| |||| | ||| | || || | | || || | ||||| Sbjct 45394 TCAACTGCTGCATAGGCCACCAGTCTCTCCCCAAAGGTGGACTTCGTGTCACCAATCCAA 45453 Query 120829 TTCATGGCCCACTCGGCCTT 120848 || | ||||| | |||||| Sbjct 45454 TTTAGAGCCCATTGGGCCTT 45473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482900621090920