Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq4653 125 5e-24 seq13344 109 4e-19 >seq4653 Length=38373 Score = 125 bits (138), Expect = 5e-24 Identities = 174/240 (73%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||||| |||||| | ||||| || || || ||||||||| ||| Sbjct 9049 AAAATCTGCATGCCACCTCGCAAACGGAGCACCAGGTGCAGCGTAGACTCTTTTTGGATG 9108 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 || |||||||| | |||||| | || || | || || || |||||||||| || ||| Sbjct 9109 TTATAATCGGACAATGTGCGACCATCCTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGC 9168 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTC 33689 ||||| | || | |||||| || || ||||| |||| | | ||| || || Sbjct 9169 TGATCCGGTGGGATACCTTCCTTATCTTGGATTTTAGCCTTCA-CGTTTTCAATCGTATC 9227 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| |||||| || | || || ||||||||||| |||||||| ||||| || ||||| Sbjct 9228 ACTTGCTTCCACTTCCAGAGTTATTGTTTTACCTGTCAACGTTTTGACAAAAATTTGCAT 9287 Score = 118 bits (130), Expect = 7e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | ||| | |||||| || || || |||||||||||||| || Sbjct 8604 ACCACCGCGCAGACGGAGCACGAGATGTAGCGTAGATTCCTTCTGTATGTTGTAATCAGA 8663 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||||| | || ||||| || || || ||||| |||| || || |||||| | || Sbjct 8664 AAGTGTGCGACCATCTTCCAACTGCTTACCAGCAAATATCAGCCGTTGTTGATCTGGAGG 8723 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||| || |||||| |||| || | || | ||| ||||| | ||| | Sbjct 8724 GATGCCTTCTTTATCCTGAATTTTAGCTTTC-ACGTTTTCGATGGTATCGCTAGCTTCAA 8782 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | || || ||||| || || ||||| || || || |||||||| Sbjct 8783 CTTCGAGAGTAATGGTTTTGCCAGTCAACGTCTTCACGAAAATCTGCAT 8831 Score = 100 bits (110), Expect = 2e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || |||||||| || || | ||||| | || || ||||| ||||| || ||| Sbjct 9325 TCCTTCTGAATGTTGTAGTCTGACAACGTGCGACCATCCTCTAATTGCTTTCCAGCGAAA 9384 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 |||||||||||||||||| |||| | ||||| || || |||||| ||| |||| Sbjct 9385 ATCAAACGCTGCTGATCTGGCGGGATTCCTTCCTTATCTTGTATTTTCGCCTTC-ACATT 9443 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | |||||||| | ||| || || | || || || || || || | || || || Sbjct 9444 CTCAATCGTGTCGCTGGCTTCAACCTCGAGGGTAATTGTCTTGCCCGTAAGAGTCTTCAC 9503 Query 33738 AAAGATCTGCAT 33749 ||| |||||||| Sbjct 9504 AAAAATCTGCAT 9515 >seq13344 Length=17380 Score = 109 bits (120), Expect = 4e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| || ||| | || | ||| || || ||| || ||||||||||| || || Sbjct 11960 ACCACCTCGCAGACGCAGAACGAGATGAAGTGTAGACTCCTTCTGTATGTTGTAGTCCGA 12019 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || || |||| || | || ||||| || ||||| | |||||| ||||| | || Sbjct 12020 GAGCGTTCGACCGTCTTCGAGCTGCTTTCCAGCGAAAATTAGACGCTGTTGATCAGGAGG 12079 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||| || |||||| || || |||| || | |||||| | ||| | Sbjct 12080 AATTCCTTCTTTATCTTGAATTTT-TGCTTTTACATTCTCGATGGTGTCCGAAGGTTCTA 12138 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 | |||| |||||| || || || || || || || || ||||| ||||| || Sbjct 12139 CCTCAAGCGTGATGGTCTTCCCAGTCAAGGTCTTAACGAAGATTTGCATCGT 12190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328359144615360