Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq4653 107 5e-18 seq13344 95.1 3e-14 >seq4653 Length=38373 Score = 107 bits (118), Expect = 5e-18 Identities = 145/201 (72%), Gaps = 1/201 (0%) Strand=Plus/Minus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| ||||||| | ||||| ||||| || ||| ||||||||||| ||| || | Sbjct 9279 TTTTGTCAAAACGTTGACAGGTAAAACAATAACTCTGGAAGTGGAAGCAAGTGATACGAT 9220 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 ||| || ||| || || ||||| || ||||| || ||||| ||| |||| Sbjct 9219 TGAAAACGTGAAGGCTAAAATCCAAGATAAGGAAGGTATCCCACCGGATCAGCAACGACT 9160 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 || || || || |||||| | || ||||| | || ||| ||||||| ||| |||| || Sbjct 9159 GATTTTTGCTGGCAAGCAGCTCGAGGATGGTCGCACATTGTCCGATTATAACATCCAAAA 9100 Query 206358 AGAGTCTACTCTTCACCTTGT 206378 ||||||||| || ||||| || Sbjct 9099 AGAGTCTACGCTGCACCTGGT 9079 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||| ||| || | ||||| ||||| || ||||||| ||| || |||| ||||| Sbjct 8839 CGAAGTCGCAATACCAAATGAAGCGTAGATTCCTTCTGGATATTGTAATCAGATAAAGTA 8898 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | |||||||| ||||||||||| ||||| || || || || || Sbjct 8899 CGACCATCTTCAAGCTGCTTTCCTGCGAAAATGAGTCGCTGCTG 8942 >seq13344 Length=17380 Score = 95.1 bits (104), Expect = 3e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAA-GCA 206252 || || || || ||||| | || || ||| ||| ||||| |||| ||||| ||| Sbjct 12163 ACTGGGAAGACCATCACGCTTGAGGTAGAACCTTCGGACACCATCGAGAATGTAAAAGCA 12104 Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAA 206312 ||| |||||||| |||||||||||| || || || | || || ||||| ||||| Sbjct 12103 AAA-ATTCAAGATAAAGAAGGAATTCCTCCTGATCAACAGCGTCTAATTTTCGCTGGAAA 12045 Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 |||| | ||||| || | || | | || |||||| | ||||| |||||||| ||||| Sbjct 12044 GCAGCTCGAAGACGGTCGAACGCTCTCGGACTACAACATACAGAAGGAGTCTACACTTCA 11985 Query 206373 CCTTGTTTTGAGACTTCGA 206391 || ||| || | || ||| Sbjct 11984 TCTCGTTCTGCGTCTGCGA 11966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1180517324413443