Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq4653 107 2e-18 seq18034 95.1 1e-14 seq13344 93.3 4e-14 >seq4653 Length=38373 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || || || |||||||| || | || || |||||| | ||| ||||| | | Sbjct 8638 GATTCCTTCTGTATGTTGTAATCAGAAAGTGTGCGACCATCTTCCAACTGCTTACCAGCA 8697 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || || || |||||||||||||| |||||||||||||| |||||| ||||| Sbjct 8698 AATATCAGCCGTTGTTGATCTGGAGGGATGCCTTCTTTATCCTGAATTTTAGCTTTCACG 8757 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | |||||| | | || ||||||| || | ||||| ||||||| || || Sbjct 8758 TTTTCGATGGTATCGCTAGCTTCAACTTCGAGAGTAATGGTTTTGCCAGTCAACGTCTTC 8817 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 8818 ACGAAAATCTGCAT 8831 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||||||||| ||||| || ||| || || || ||| |||||||| || || | | Sbjct 9094 GACTCTTTTTGGATGTTATAATCGGACAATGTGCGACCATCCTCGAGCTGCTTGCCAGCA 9153 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || || || || ||||| || || || ||||| ||||| ||||| |||| Sbjct 9154 AAAATCAGTCGTTGCTGATCCGGTGGGATACCTTCCTTATCTTGGATTTTAGCCTTCACG 9213 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||||| | | |||||||| | || | |||||||| |||| ||||| Sbjct 9214 TTTTCAATCGTATCACTTGCTTCCACTTCCAGAGTTATTGTTTTACCTGTCAACGTTTTG 9273 Query 132110 ATGAAAATCTGCATG 132124 | ||||| |||||| Sbjct 9274 ACAAAAATTTGCATG 9288 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||||||| | | || || || || || ||||| || | ||||| | Sbjct 8845 CGCAATACCAAATGAAGCGTAGATTCCTTCTGGATATTGTAATCAGATAAAGTACGACCA 8904 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || || | | || || ||||| || ||||| || |||||||| ||| Sbjct 8905 TCTTCAAGCTGCTTTCCTGCGAAAATGAGTCGCTGCTGGTCTGGTGGAATGCCTTCCTTA 8964 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || ||| | | ||| | |||||| | | || || || | ||| | Sbjct 8965 TCCTGGATCTTAGCTTTTACGTTTTCGATAGTATCACTAGCTTCAACCTCCAACGTAATA 9024 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || || ||||||||||| | |||||||||||| Sbjct 9025 GTCTTTCCGGTCAGAGTTTTCACAAAAATCTGCATG 9060 >seq18034 Length=13003 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 147463 aTAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCG 147522 ||||||||||||||||| ||||| | ||||| | || |||| ||| ||||| | | Sbjct 8885 ATAGACGCCAGATTGCAAACGGCAATTTCTTCTGGTGAACTATACTCCACAATTTCAGTG 8944 Query 147523 CACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCG 147582 ||||| || ||||| || || ||||| || || || ||||| || || ||||| ||| Sbjct 8945 CACAGATTACTGCACTTGATCGTTCCCAGGTTCTGTTGGTTGCTCTTGCGGTTGCATGCG 9004 Query 147583 TCTTTGAAGAGCATGTACGG 147602 || ||| | |||||| |||| Sbjct 9005 TCCTTGTAAAGCATGAACGG 9024 >seq13344 Length=17380 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| |||| ||| | ||| | | ||||| || || ||||||||||| | || Sbjct 11967 CGCAGACGCAGAACGAGATGAAGTGTAGACTCCTTCTGTATGTTGTAGTCCGAGAGCGTT 12026 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || ||||||||||| || || | | ||||||||||||||||| ||||| || ||| Sbjct 12027 CGACCGTCTTCGAGCTGCTTTCCAGCGAAAATTAGACGCTGTTGATCAGGAGGAATTCCT 12086 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 |||||||| ||||||| ||| | | || | || || | || || || || | | Sbjct 12087 TCTTTATCTTGAATTTTTGCTTTTACATTCTCGATGGTGTCCGAAGGTTCTACCTCAAGC 12146 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || ||||||| || || | ||| || ||||| Sbjct 12147 GTGATGGTCTTCCCAGTCAAGGTCTTAACGAAGATTTGCAT 12187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476098348475880