Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq4653 105 5e-18 >seq4653 Length=38373 Score = 105 bits (116), Expect = 5e-18 Identities = 148/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| ||||| || || || ||||||||||| |||||||| | ||| ||| | || Sbjct 8831 ATGCAGATTTTCGTGAAGACGTTGACTGGCAAAACCATTACTCTCGAAGTTGAAGCTAGC 8772 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | | | | |||||| |||||| || ||||||||| | || |||||| Sbjct 8771 GATACCATCGAAAACGTGAAAGCTAAAATTCAGGATAAAGAAGGCATCCCTCCAGATCAA 8712 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGAT--TCTAAAACTATGGGCGATTACA 106437 ||| |||| || | ||| || || || || |||||| || | ||| | ||||||| Sbjct 8711 CAACGGCTGATATTTGCTGGTAAGCAGTTGGAAGATGGTCGCACACTTT--CTGATTACA 8654 Query 106438 ACATACAAAAAGAATCTACACTACAT 106463 ||||||| || |||||||| |||||| Sbjct 8653 ACATACAGAAGGAATCTACGCTACAT 8628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 401907501306464