Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq16268 107 3e-17 seq1323 107 3e-17 seq2508 100 4e-15 seq27126 91.5 2e-12 seq8840 89.7 7e-12 >seq16268 Length=14456 Score = 107 bits (118), Expect = 3e-17 Identities = 165/233 (71%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||| | ||||| || ||| |||| | ||| ||| ||| | Sbjct 9605 ATCTACAAGGTGTTGCGCCAGGTTCATCCCGATACCGGT-----ATC-TCCTCGAAGGCG 9552 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||||||||||||||||||||| ||||| || |||| || || | | ||||| || | Sbjct 9551 ATGTCGATCATGAACTCGTTTGTGAACGATATTTTCGAGCGTATTGCCGCCGAGTCCAGC 9492 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGC---GAGATCCAGACCGCC 725087 || || || | || ||||||||| || || |||| || || ||||| || || Sbjct 9491 CGTCTTGCCCACTACAACAAGCGGTCAACCAT---CACGAGCAGAGAAATCCAAACTGCT 9435 Query 725088 GTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || || || | ||| ||| ||||| || | ||||||||| || |||||||| Sbjct 9434 GTTCGTCTATTGCTGCCCGGTGAACTTGCGAAGCACGCCGTTTCTGAGGGCAC 9382 >seq1323 Length=72209 Score = 107 bits (118), Expect = 3e-17 Identities = 165/233 (71%), Gaps = 12/233 (5%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||| | ||||| || ||| |||| | ||| ||| ||| | Sbjct 28141 ATCTACAAGGTGTTGCGCCAGGTTCATCCCGATACCGGT-----ATC-TCCTCGAAGGCG 28194 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||||||||||||||||||||| ||||| || |||| || || | | ||||| || | Sbjct 28195 ATGTCGATCATGAACTCGTTTGTGAACGATATTTTCGAGCGTATTGCCGCCGAGTCCAGC 28254 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGC---GAGATCCAGACCGCC 725087 || || || | || ||||||||| || || |||| || || ||||| || || Sbjct 28255 CGTCTTGCCCACTACAACAAGCGGTCAACCAT---CACGAGCAGAGAAATCCAAACTGCT 28311 Query 725088 GTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || || || | ||| ||| ||||| || | ||||||||| || |||||||| Sbjct 28312 GTTCGTCTATTGCTGCCCGGTGAACTTGCGAAGCACGCCGTTTCTGAGGGCAC 28364 >seq2508 Length=53929 Score = 100 bits (110), Expect = 4e-15 Identities = 387/603 (64%), Gaps = 44/603 (7%) Strand=Plus/Minus Query 1455743 CGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGA 1455802 |||||||| || || || || | || | |||||| || ||| |||||||| | Sbjct 45886 CGCTTTGTGCTCTTTCCTATTCAGTATAACGAAATATGGCAATACTAC-AAAAAGGCAGT 45828 Query 1455803 GGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTC 1455862 ||||||||||||||| | ||||| ||||| || || | | | |||| Sbjct 45827 GGCCTCCTTTTGGACTGTTGAGGAAGTCGATCTTTCAAAGGATCTGACCGATTGGGAACG 45768 Query 1455863 GCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCG 1455922 | | | | |||||||| ||||| ||||||| || |||||| |||||||||| Sbjct 45767 ATTAAAGGTGGGAGAGCGCCACTTCATATCTTACGTCCTGGCGTTTTTT-GCCGCCAGCG 45709 Query 1455923 ATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGG 1455982 | || ||||| ||| || ||| || || || | ||||||| ||| | || || | Sbjct 45708 ACGGTATCGTCCTCGAAAATCTGCTCGAGCGATTCAGTCAAGAGGTTCAAATTCCTGAAG 45649 Query 1455983 CACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGC 1456042 | || | ||||| || | || || ||| | || || ||||| ||||||| || | | Sbjct 45648 CGCGCTGCTTTTATGGAATGCAAATTGCCGTGGAGAATATCCATTCTGAAATGTATTGTC 45589 Query 1456043 TCCTGATCGACACCTACGTCAAGGACC--------CGG----TCGAGAAGGACCACCTCT 1456090 | || || ||||| ||| |||| |||| ||| | || || | |||| Sbjct 45588 TACTTATAGACACGTACATCAAAGACCCTAAAGAACGGTAAATTGATAACTTGCTGCTCT 45529 Query 1456091 TTCGCGCCAT----------------CGACACGGTGCC--GTCGGTGAGGAA--AAAGGC 1456130 ||| | | | | ||| || | ||| |||| ||||| Sbjct 45528 ATCGTTCAGTGACTTCTTGTTTAATGCTATACGAAACCTAGAATGTGTGGAACGCAAGGC 45469 Query 1456131 CGACTGGGCGATGAAGTGGAT---CAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTC 1456187 | | ||||| | || ||||| ||| | || || || ||||| ||| | || Sbjct 45468 CCAATGGGCTCTAAATTGGATTGGTGACACGAAG----TCCAC-CTTTGGGGAGAGACTG 45414 Query 1456188 GTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGG 1456246 || | || ||| || || |||||| | ||||||||||| || ||| || || |||||| Sbjct 45413 GTGGCCTATGCAGCAGTTGAGGGCGTATTTTTCTCGGGAAGCTTCGCTGCGATATTTTGG 45354 Query 1456247 CTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGA 1456306 ||||| ||||| ||||||||||||||| || ||| || || ||| | || ||||| || Sbjct 45353 CTCAAAAAGCGAGGCCTCATGCCCGGT-TTAACCTTCAGTAATGAACTCATTAGTCGAGA 45295 Query 1456307 CGA 1456309 || Sbjct 45294 TGA 45292 >seq27126 Length=7760 Score = 91.5 bits (100), Expect = 2e-12 Identities = 127/175 (73%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||||||||| ||||| ||||| | || ||||| | | ||||| | || Sbjct 7070 ATGTCCATCATGAACTCGTTCGTCAATGACATCTTTGAACGCATTGCCTCCGAGTCGAGT 7011 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGC-GAGA--TCCAGACCGCC 725087 || || || | || ||| |||||| || ||| || || |||| |||| || || Sbjct 7010 CGTCTTGCTCACTACAATAAGCGCTCGACCATC---ACTAGCAGAGAAGTCCAAACTGCA 6954 Query 725088 GTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || || | ||| || || |||||| ||| |||||||||||||| |||| Sbjct 6953 GTTCGTCTTCTGTTGCCTGGTGAGTTGGCCAAGCATGCCGTCTCCGAGGGTACCA 6899 >seq8840 Length=24644 Score = 89.7 bits (98), Expect = 7e-12 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 724969 CCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCG 725028 ||||| | |||||||||||||| ||||| || || | || || || | | ||||| | Sbjct 11913 CCATGCCTATCATGAACTCGTTCGTCAATGAGATCTTTGAACGTATTGCCTCCGAGTCGA 11972 Query 725029 GTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 | || || || | || |||||||||| || ||| | | |||||||| | || | Sbjct 11973 GCCGTCTTGCTCACTACAACAAGCGCTCGACCATCACGAACAGAGAGATCCAAATTGCAG 12032 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || || | ||| ||| || |||||| ||| ||||||||||||| ||||| Sbjct 12033 TTCGTCTTCTGTTGCCCGGTGAGTTGGCCAAGCATGCCGTCTCCGAGGACACCA 12086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7169508336429446