Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq4653 116 3e-21 >seq4653 Length=38373 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | | ||| |||||||| | |||| ||||| || || |||||||| | Sbjct 8833 CCACCGCGAAGTCGCAATACCAAATGAAGCGTAGATTCCTTCTGGATATTGTAATCAGAT 8892 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || || |||||||| || || || || | ||||||||||| | ||| Sbjct 8893 AAAGTACGACCATCTTCAAGCTGCTTTCCTGCGAAAATGAGTCGCTGCTGGTCTGGTGGA 8952 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || ||||| ||| |||||| || | || | | || || || | ||| ||| Sbjct 8953 ATGCCTTCCTTATCCTGGATCTTAGCTTTTACGTTTTCGATAGTATCACTAGCTTCAACC 9012 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||| || || || || |||| |||||||||||| |||||||| Sbjct 9013 TCCAACGTAATAGTCTTTCCGGTCAGAGTTTTCACAAAAATCTGCAT 9059 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||| | ||||| |||| ||||| || ||||||||||| | | || || | || || Sbjct 8622 CACGAGATGTAGCGTAGATTCCTTCTGTATGTTGTAATCAGAAAGTGTGCGACCATCTTC 8681 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 || ||||||||| |||||||||| ||| || || || | ||| | || || || ||| | Sbjct 8682 CAACTGCTTACCAGCAAATATCAGCCGTTGTTGATCTGGAGGGATGCCTTCTTTATCC-T 8740 Query 35647 GATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTT 35705 || ||| || |||| || | | || ||||| | ||| || || | || || |||| Sbjct 8741 GAATTTTAGCTTTCACGTTTTCGATGGTATCGCTAGCTTCAACTTCGAGAGTAATGGTTT 8800 Query 35706 TACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || ||||| || ||||| || |||||||| Sbjct 8801 TGCCAGTCAACGTCTTCACGAAAATCTGCAT 8831 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | || ||| || | ||| || || ||||| ||||||||||| || | | Sbjct 9289 CCACCGCGAAGCCGCAAAACAAGATGCAATGTGGATTCCTTCTGAATGTTGTAGTCTGAC 9348 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || || | ||||| || || || ||||| |||||||| || | || Sbjct 9349 AACGTGCGACCATCCTCTAATTGCTTTCCAGCGAAAATCAAACGCTGCTGATCTGGCGGG 9408 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| || || || ||||| | | | | ||||||||| | ||| ||| Sbjct 9409 ATTCCTTCCTTATCTTGTATTTTCGCCTTCACATTCTCAATCGTGTCGCTGGCTTCAACC 9468 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 || | || || || || ||||| | ||| |||||||| |||||||| ||| Sbjct 9469 TCGAGGGTAATTGTCTTGCCCGTAAGAGTCTTCACAAAAATCTGCATCCTG 9519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450308529181640