Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq13344 134 1e-26 seq4653 132 5e-26 seq18034 127 2e-24 >seq13344 Length=17380 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| || |||| ||||| || || || || ||||| || ||||||||||| Sbjct 11961 CCACCTCGCAGACGCAGAACGAGATGAAGTGTAGACTCCTTCTGTATGTTGTAGTCCGAG 12020 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || ||| |||||||| || || || ||||| | |||||| ||||| || || Sbjct 12021 AGCGTTCGACCGTCTTCGAGCTGCTTTCCAGCGAAAATTAGACGCTGTTGATCAGGAGGA 12080 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || |||||||| |||||||||||| ||| || || | ||||| || | ||| || Sbjct 12081 ATTCCTTCTTTATCTTGAATTTTTGCTTTTACATTCTCGATGGTGTCCGAAGGTTCTACC 12140 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || || || |||||||| |||||||| Sbjct 12141 TCAAGCGTGATGGTCTTCCCAGTCAAGGTCTTAACGAAGATTTGCAT 12187 >seq4653 Length=38373 Score = 132 bits (146), Expect = 5e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | |||||| |||||||| |||||||| || |||||||| || || ||| || Sbjct 8614 AGACGGAGCACGAGATGTAGCGTAGATTCCTTCTGTATGTTGTAATCAGAAAGTGTGCGA 8673 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || | ||| || || ||||| |||| || || ||||| || || ||||||||| Sbjct 8674 CCATCTTCCAACTGCTTACCAGCAAATATCAGCCGTTGTTGATCTGGAGGGATGCCTTCT 8733 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || |||||||| ||| || || | || ||| | ||| || ||||||||| Sbjct 8734 TTATCCTGAATTTTAGCTTTCACGTTTTCGATGGTATCGCTAGCTTCAACTTCGAGAGTA 8793 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| || || || || || |||||||| ||||| Sbjct 8794 ATGGTTTTGCCAGTCAACGTCTTCACGAAAATCTGCAT 8831 Score = 127 bits (140), Expect = 2e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 || ||||| || || || | ||||||||||| |||||||||||||| | |||| ||| | Sbjct 9298 AGCCGCAAAACAAGATGCAATGTGGATTCCTTCTGAATGTTGTAGTCTGACAAC-GTGCG 9356 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 | || || | || || || || |||||||||||||||||||| ||||| || ||||| Sbjct 9357 ACCATCCTCTAATTGCTTTCCAGCGAAAATCAAACGCTGCTGATCTGGCGGGATTCCTTC 9416 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || ||||| ||||| || || || | |||||| | ||| || ||||| || Sbjct 9417 CTTATCTTGTATTTTCGCCTTCACATTCTCAATCGTGTCGCTGGCTTCAACCTCGAGGGT 9476 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||| || || || || | ||| || || ||||| ||||| Sbjct 9477 AATTGTCTTGCCCGTAAGAGTCTTCACAAAAATCTGCAT 9515 Score = 125 bits (138), Expect = 7e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 134504 CACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTC 134563 ||| ||||| ||||| || || ||||| ||||| || ||| | ||| || || || Sbjct 9078 CACCAGGTGCAGCGTAGACTCTTTTTGGATGTTATAATCGGACAATGTGCGACCATCCTC 9137 Query 134564 GAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTG 134623 |||||| ||||| |||||||||| || |||||||| || || || ||||| || ||||| Sbjct 9138 GAGCTGCTTGCCAGCAAAAATCAGTCGTTGCTGATCCGGTGGGATACCTTCCTTATCTTG 9197 Query 134624 AATTTTTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCACGTCGAGAGTAATGGTTT 134682 ||||| || || | | |||| || || | |||||| || ||||| || |||| Sbjct 9198 GATTTTAGCCTTCAC-GTTTTCAATCGTATCACTTGCTTCCACTTCCAGAGTTATTGTTT 9256 Query 134683 TACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||| || || ||||| || ||||||||||| Sbjct 9257 TACCTGTCAACGTTTTGACAAAAATTTGCAT 9287 >seq18034 Length=13003 Score = 127 bits (140), Expect = 2e-24 Identities = 130/170 (76%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 8233 GCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGC 8292 |||||||| || ||||| ||||| |||| |||| |||||| ||||| ||||| ||| Sbjct 9057 GCCATTATTCAAGCTCAAATTGAAACGGGTAATCCGTTCATGCTTTACAAGGACGCATGC 8998 Query 8293 AACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAA 8352 ||| ||| ||||| ||| ||| |||| || || ||||| ||||||||| ||||| Sbjct 8997 AACCGCAAGAGCAACCAACAGAACCTGGGAACGATCAAGTGCAGTAATCTGTGCACTGAA 8938 Query 8353 ATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTC 8402 ||||| |||| || | || || ||| | |||||||||||||| ||||| Sbjct 8937 ATTGTGGAGTATAGTTCACCAGAAGAAATTGCCGTTTGCAATCTGGCGTC 8888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504854572369160