Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2508 143 4e-29 seq18034 98.7 1e-15 >seq2508 Length=53929 Score = 143 bits (158), Expect = 4e-29 Identities = 398/609 (65%), Gaps = 51/609 (8%) Strand=Plus/Plus Query 39632 TGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCA 39691 || || |||||||||| |||||| | ||| ||| || || | || ||||| || || Sbjct 45283 TGCAGACCCTCATCTCGACTAATGAGTTCATTACTGAAGGTTAAACCGGGCATGAGGCCT 45342 Query 39692 CGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCT 39751 |||||||||||||||||||| ||||| || ||| || || || | ||| || |||||| Sbjct 45343 CGCTTTTTGAGCCAAAATATCGCAGCGAAGCTTCCCGAGAAAAATACGCCCTCAACTGCT 45402 Query 39752 GCAAATGCAACAAGTCTCTCTCC----GT-AACTT-GTATCATTATGTATCCACTTCTGT 39805 ||| | || || |||||||| || || |||| || ||| | ||||| || | Sbjct 45403 GCATAGGCCACCAGTCTCTCCCCAAAGGTGGACTTCGTGTCACCA---ATCCAATTTAGA 45459 Query 39806 GCCCAATCAGCTTTCTTCTTTACACAAGGCATT----GTTTC-TATAGCATTAAAGA--- 39857 ||||| | || | | | || |||| |||| ||||| |||||||||||| | Sbjct 45460 GCCCATTGGGCCT--TGCGTTCCACA---CATTCTAGGTTTCGTATAGCATTAAACAAGA 45514 Query 39858 -----------GATA-------ATGTT-----------TTTCATCACTATCTTTAACATA 39888 |||| | ||| ||| | | ||||| | || Sbjct 45515 AGTCACTGAACGATAGAGCAGCAAGTTATCAATTTACCGTTCTTTAGGGTCTTTGATGTA 45574 Query 39889 TGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCC 39948 || ||||| | |||| ||||||||| |||||||| || || | || || || | ||| Sbjct 45575 CGTGTCTATAAGTAGACAATACATTTCAGAATGGATATTCTCCACGGCAATTTGCATTCC 45634 Query 39949 GTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTC 40008 ||||| || | ||||||| |||||| |||||| || |||| || || |||||| Sbjct 45635 ATAAAAGCAGCGCGCTTCAGGAATTTGAACCTCTTGACTGAATCGCTCGAGCAGATTTTC 45694 Query 40009 ATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTC 40068 || || || || || ||||||||||| |||| || | || || | || Sbjct 45695 GAGGACGATACCGTCGCTGGCGGCAAAAAACGCCAGGACGTAAGATATGAAGTGGCGCTC 45754 Query 40069 ATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGT 40128 | | ||| | ||| || | | ||| ||||| | ||| ||||| ||| | || Sbjct 45755 TCCCACCTTTAATCGTTCCCAATCGGTCAGATCCTTTGAAAGATCGACTTCCTCAACAGT 45814 Query 40129 CCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAA 40188 |||||| || ||| ||||||||||||| | |||||| || ||| || || ||||| Sbjct 45815 CCAAAAGGAGGCCACTGCCTTTTTGTAGTATTGCCATATTTCGTTATACTGAATAGGAAA 45874 Query 40189 AATAACAAA 40197 | ||||| Sbjct 45875 GAGCACAAA 45883 Score = 95.1 bits (104), Expect = 2e-14 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 39309 GTGACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGC 39368 ||||||| ||||| | ||| || || ||||| ||||||||||| |||||||| |||| Sbjct 44926 GTGACATCACTCCAGCTCGTTGATAATCTCCAACACGTTTCTCGAAGAAATTAGTCTTGC 44985 Query 39369 CTTCCAATGATATATTTTCCATGAAATCAAACGGATT 39405 |||| || |||||||| |||||||| || ||||| || Sbjct 44986 CTTCTAAAGATATATTCTCCATGAAGTCGAACGGGTT 45022 >seq18034 Length=13003 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 69325 ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG 69384 || || || || |||||||| || ||||| || ||||| || || || || ||||| | Sbjct 8936 ATTTCAGTGCACAGATTACTGCACTTGATCGTTCCCAGGTTCTGTTGGTTGCTCTTGCGG 8995 Query 69385 TTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAAT 69443 || || |||||||||||||| || |||||| |||| |||||||| |||| || ||||| Sbjct 8996 TTGCATGCGTCCTTGTAAAGCATGAACGGATTACCCGTTTCAATTTGAGCTTGAATAAT 9054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686169660372120