Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2508 167 2e-36 seq2617 89.7 4e-13 >seq2508 Length=53929 Score = 167 bits (184), Expect = 2e-36 Identities = 229/320 (72%), Gaps = 0/320 (0%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 ||||| | ||||| ||||| ||| | || ||||||||| |||||||| ||| ||| Sbjct 45883 TTTGTGCTCTTTCCTATTCAGTATAACGAAATATGGCAATACTACAAAAAGGCAGTGGCC 45824 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTA 43819 || |||||||| | || ||||| ||| | | || || | | ||||| |||| Sbjct 45823 TCCTTTTGGACTGTTGAGGAAGTCGATCTTTCAAAGGATCTGACCGATTGGGAACGATTA 45764 Query 43820 AAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGG 43879 || ||| || || ||||||| || ||||||||||||| || |||||||| Sbjct 45763 AAGGTGGGAGAGCGCCACTTCATATCTTACGTCCTGGCGTTTTTTGCCGCCAGCGACGGT 45704 Query 43880 ATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGA 43939 || ||| |||||| || | || || ||||| |||||| | || ||||| || Sbjct 45703 ATCGTCCTCGAAAATCTGCTCGAGCGATTCAGTCAAGAGGTTCAAATTCCTGAAGCGCGC 45644 Query 43940 TGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTG 43999 || |||||||| | ||||||||| | || ||||| ||||| |||||||| |||| || Sbjct 45643 TGCTTTTATGGAATGCAAATTGCCGTGGAGAATATCCATTCTGAAATGTATTGTCTACTT 45584 Query 44000 ATAGATACGTACATCAAAGA 44019 ||||| |||||||||||||| Sbjct 45583 ATAGACACGTACATCAAAGA 45564 >seq2617 Length=52584 Score = 89.7 bits (98), Expect = 4e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 41138 GGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACA 41197 ||| || || |||||||||||| | ||||| ||| | |||||||| || |||||||| || Sbjct 24969 GGGTCTGGGCGTCCCGTTTAACGTTGCGAGCTATTCACTGCTCACCTACATGATTGCTCA 24910 Query 41198 CGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACAT 41257 | || | ||||| ||||||||||| ||||| | || |||| ||||| ||| Sbjct 24909 TATGACTGGACTCAAACCGGGTGAATTTGTGCACACCATGGGTGATGCGCATATCTACTC 24850 Query 41258 TAATCACATAGAGCCGTTAACAGAACA 41284 ||||| ||| |||| || ||||| Sbjct 24849 AAATCATCAAGAAGCGTTGACCGAACA 24823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397039014378415