Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq4653 129 5e-25 seq18034 113 4e-20 seq13344 86.0 5e-12 >seq4653 Length=38373 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 || ||||| | |||||||||||||| | |||||| || || || |||||||| || | | Sbjct 8833 CCACCGCGAAGTCGCAATACCAAATGAAGCGTAGATTCCTTCTGGATATTGTAATCAGAT 8892 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | || || | ||||| ||||| || || ||| ||||||| ||||| || || || || Sbjct 8893 AAAGTA-CGACCATCTTCAAGCTGCTTTCCTGCGAAAATGAGTCGCTGCTGGTCTGGTGG 8951 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || || ||||| |||||| ||| | | |||| | ||| || | |||||||| Sbjct 8952 AATGCCTTCCTTATCCTGGATCTTAGCTTTTACGTTTTCGATAGTATCACTAGCTTCAAC 9011 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || |||| || || ||||||||||||||||| || ||||| Sbjct 9012 CTCCAACGTAATAGTCTTTCCGGTCAGAGTTTTCACAAAAATCTGCAT 9059 Score = 104 bits (114), Expect = 2e-17 Identities = 168/241 (70%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 27009 TCATAATTATTG--CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAA 27066 ||||||||| | || ||||||| || | || | ||||| |||||| || || || | Sbjct 8591 TCATAATTAATTAACCACCGCGCAGACGGAGCACGAGATGTAGCGTAGATTCCTTCTGTA 8650 Query 27067 TATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCT 27126 | ||||| || | |||| | ||||| | ||| ||||| || | || || || | Sbjct 8651 TGTTGTAATCAGAAAGTGTGCGACCATCTTCCAACTGCTTACCAGCAAATATCAGCCGTT 8710 Query 27127 GTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGT 27186 ||||||| || || | || |||||||| || || ||||| | |||| | || | Sbjct 8711 GTTGATCTGGAGGGATGCCTTCTTTATCCTGAATTTTAGCTTTCACGTTTTCGATGGTAT 8770 Query 27187 CTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCA 27246 | | ||||||||||| ||||| || | |||||| |||| || ||||| || || |||| Sbjct 8771 CGCTAGCTTCAACTTCGAGAGTAATGGTTTTGCCAGTCAACGTCTTCACGAAAATCTGCA 8830 Query 27247 T 27247 | Sbjct 8831 T 8831 >seq18034 Length=13003 Score = 113 bits (124), Expect = 4e-20 Identities = 161/224 (72%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 131275 TTTGTCGAAATCAAACGTGCCAGTTTCGAGGTTTACAAATTGATTTACACATATTGACGC 131334 ||| || ||||| || || | ||||| ||| || || ||| ||| | || ||||| Sbjct 8833 TTTCTCAAAATCGAAGGTTCGCTTTTCGGGGTCGACGAAGTGACCGACAGAAATAGACGC 8892 Query 131335 CAGATTACAAACTGCCGTTTCGTCATAATCGCAATACTGAACAATTTCGGCGCACAAATT 131394 |||||| ||||| || |||| || | ||||| |||||||| | ||||| ||| Sbjct 8893 CAGATTGCAAACGGCAATTTCTTCTGGTGAACTATACTCCACAATTTCAGTGCACAGATT 8952 Query 131395 ACTGCTCTTTATGGTGCCCAAATTTTGTTGATTGCTTTTAGCATTCACATG-GTCCTTGT 131453 ||||| ||| || || |||| || ||||| ||||| || || | |||| |||||||| Sbjct 8953 ACTGCACTTGATCGTTCCCAGGTTCTGTTGGTTGCTCTT-GCGGTTGCATGCGTCCTTGT 9011 Query 131454 ACATCATGTAGGGCGTGCCCGTTTCGACTTGAGTTTCAATAATG 131497 | | |||| | || | |||||||| | ||||| || ||||||| Sbjct 9012 AAAGCATGAACGGATTACCCGTTTCAATTTGAGCTTGAATAATG 9055 >seq13344 Length=17380 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| |||| || | ||| | ||||| || || || || |||||||| Sbjct 11961 CCACCTCGCAGACGCAGAACGAGATGAAGTGTAGACTCCTTCTGTATGTTGTAGTCCGAG 12020 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || ||||||||||||| || || ||| |||| |||||||||||||| || || Sbjct 12021 AGCGTTCGACCGTCTTCGAGCTGCTTTCCAGCGAAAATTAGACGCTGTTGATCAGGAGGA 12080 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || |||||||| || || ||| | | || | ||||| | | ||| || Sbjct 12081 ATTCCTTCTTTATCTTGAATTTTTGCTTTTACATTCTCGATGGTGTCCGAAGGTTCTACC 12140 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | || || |||| || || || ||||||||||| Sbjct 12141 TCAAGCGTGATGGTCTTCCCAGTCAAGGTCTTAACGAAGATTTGCAT 12187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424488585784296