Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq4653 185 1e-41 seq13344 152 6e-32 seq18034 95.1 1e-14 >seq4653 Length=38373 Score = 185 bits (204), Expect = 1e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| ||||| |||||||| ||||| || |||||||| | | Sbjct 9515 ATGCAGATTTTTGTGAAGACTCTTACGGGCAAGACAATTACCCTCGAGGTTGAAGCCAGC 9456 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| ||||||| ||||| || || ||||| ||||| || ||||| ||| Sbjct 9455 GACACGATTGAGAATGTGAAGGCGAAAATACAAGATAAGGAAGGAATCCCGCCAGATCAG 9396 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | ||||| ||||| |||||| | ||||||| ||| || | ||||||| || Sbjct 9395 CAGCGTTTGATTTTCGCTGGAAAGCAATTAGAGGATGGTCGCACGTTGTCAGACTACAAC 9336 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||||||||| | ||||| || ||||| ||||||||||| Sbjct 9335 ATTCAGAAGGAATCCACATTGCATCTTGTTTTGCGGCTTCGCGGTGG 9289 Score = 179 bits (198), Expect = 4e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| || || || ||||| ||||||||||| | |||||||| | || Sbjct 9059 ATGCAGATTTTTGTGAAAACTCTGACCGGAAAGACTATTACGTTGGAGGTTGAAGCTAGT 9000 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| | || ||||| || ||||| ||||| || ||||| ||||||||| Sbjct 8999 GATACTATCGAAAACGTAAAAGCTAAGATCCAGGATAAGGAAGGCATTCCACCAGACCAG 8940 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || ||||| || || ||||| || || |||| |||||| || | || || ||| Sbjct 8939 CAGCGACTCATTTTCGCAGGAAAGCAGCTTGAAGATGGTCGTACTTTATCTGATTACAAT 8880 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| || |||||| | || ||||| ||||||||||| Sbjct 8879 ATCCAGAAGGAATCTACGCTTCATTTGGTATTGCGACTTCGCGGTGG 8833 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || |||||| | || ||||| || |||||||| || ||||| | | Sbjct 8831 ATGCAGATTTTCGTGAAGACGTTGACTGGCAAAACCATTACTCTCGAAGTTGAAGCTAGC 8772 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | ||| |||| |||||||||||||| || || || || |||||||| || Sbjct 8771 GATACCATCGAAAACGTGAAAGCTAAAATTCAGGATAAAGAAGGCATCCCTCCAGATCAA 8712 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || || || |||||||||||||| | || |||| ||| || || | || || || Sbjct 8711 CAACGGCTGATATTTGCTGGTAAGCAGTTGGAAGATGGTCGCACACTTTCTGATTACAAC 8652 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || |||||||| || || ||||| || | ||||| |||||||| Sbjct 8651 ATACAGAAGGAATCTACGCTACATCTCGTGCTCCGTCTGCGCGGTGG 8605 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| |||||||| ||| | || || || || || ||||| || || || || || Sbjct 9287 ATGCAAATTTTTGTCAAAACGTTGACAGGTAAAACAATAACTCTGGAAGTGGAAGCAAGT 9228 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| ||||||||||||| || || ||||| || || || || || ||| Sbjct 9227 GATACGATTGAAAACGTGAAGGCTAAAATCCAAGATAAGGAAGGTATCCCACCGGATCAG 9168 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || || ||||||||||| ||||| |||||||||| ||| || | | || ||||| Sbjct 9167 CAACGACTGATTTTTGCTGGCAAGCAGCTCGAGGATGGTCGCACATTGTCCGATTATAAC 9108 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||| || || || || || || || | ||| | || ||||| Sbjct 9107 ATCCAAAAAGAGTCTACGCTGCACCTGGTGCTCCGTTTGCGAGGTGG 9061 >seq13344 Length=17380 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| | || || ||||| || || |||||||| || | Sbjct 12187 ATGCAAATCTTCGTTAAGACCTTGACTGGGAAGACCATCACGCTTGAGGTAGAACCTTCG 12128 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | || || |||||||| || || || ||||||||||| || || Sbjct 12127 GACACCATCGAGAATGTAAAAGCAAAAATTCAAGATAAAGAAGGAATTCCTCCTGATCAA 12068 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||||||||| ||||| ||||| ||||| || | ||| || || | ||||| || Sbjct 12067 CAGCGTCTAATTTTCGCTGGAAAGCAGCTCGAAGACGGTCGAACGCTCTCGGACTACAAC 12008 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || |||||||| || ||||||| || ||||| Sbjct 12007 ATACAGAAGGAGTCTACACTTCATCTCGTTCTGCGTCTGCGAGGTGG 11961 >seq18034 Length=13003 Score = 95.1 bits (104), Expect = 1e-14 Identities = 170/246 (69%), Gaps = 12/246 (5%) Strand=Plus/Plus Query 80820 GTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTGGTT 80879 ||||||||||||||| | || || || || | || ||||||| ||| ||||| |||| Sbjct 8794 GTTCAGGTTGCGTGTTGCCACGCGCGTCACGTACTGGAGTTTCTCAAAATCGAA--GGTT 8851 Query 80880 CCCCTTC--------ACAAA-TGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCAC 80930 | | || || || || | || | | |||||||||||||| ||||| | Sbjct 8852 CGCTTTTCGGGGTCGACGAAGTGACCGACAGAA-ATAGACGCCAGATTGCAAACGGCAAT 8910 Query 80931 CTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACC 80990 ||||| | || |||| || ||||| ||||||| |||| |||| || || || Sbjct 8911 TTCTTCTGGTGAACTATACTCCACAATTTCAGTGCACAGATTACTGCACTTGATCGTTCC 8970 Query 80991 CAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACC 81050 |||||| | ||||| |||| |||||| ||||||||||| |||| |||| |||| Sbjct 8971 CAGGTTCTGTTGGTTGCTCTTGCGGTTGCATGCGTCCTTGTAAAGCATGAACGGATTACC 9030 Query 81051 GGTCTC 81056 || || Sbjct 9031 CGTTTC 9036 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/202 (71%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 81541 TTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCAT-GTCAAGCAAGAAACAGCT 81599 |||| || || ||||| || ||||| ||||||| ||||| ||||| |||||||||||| Sbjct 11211 TTCAATGTATCGTAAATACCTTCGATACTATCTTCCTTCATCGTCAA-CAAGAAACAGCT 11269 Query 81600 TGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATA 81659 |||| ||| || | || ||||||||||||| || |||| ||||| |||| | Sbjct 11270 GGACAGCTGCGGTTTAGGTGTTCCGGCATTGAACAACGTCGGGGAGGCGTGTGTGAACCA 11329 Query 81660 ACGGTTTGACATCAGGTCATAGGTTTC-CTTGACGCGTGGAATATCGTCACCGTGAATAC 81718 | ||||| |||| |||||||| ||| | | | |||||||| ||||| | Sbjct 11330 CTTTTCGGACATAAGGTTGTAGGTTTCGATTGCTCCATCG-ATATCGTCCATATGAATCC 11388 Query 81719 CGATAGCTACACGCATAAACAT 81740 | || | || ||||| | ||| Sbjct 11389 CAATTGACACGCGCATTACCAT 11410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569696724622960