Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq4653 109 3e-19 >seq4653 Length=38373 Score = 109 bits (120), Expect = 3e-19 Identities = 166/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| | ||| | ||||| || || || ||| ||||| ||||||||||| || Sbjct 9060 GCCACCTCGCAAACGGAGCACCAGGTGCAGCGTAGACTCTTTTTGGATGTTATAATCGGA 9119 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | ||| || | || || || || || || ||||| || | || || || ||||| || Sbjct 9120 CAATGTGCGACCATCCTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGCTGATCCGGTGG 9179 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTC-TTCGCTCTCC 34656 | || ||||| ||| ||| ||| | || ||| | ||| || || | ||| ||| Sbjct 9180 GATACCTTCCTTATCTTGGAT-TTTAGCCTTCACGTTTTCAATCGTATCACTTGCT-TCC 9237 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||||| ||||| |||||||| || |||||||| |||||||| |||||| Sbjct 9238 ACTTCCAGAGTTATTGTTTTACCTGTCAACGTTTTGACAAAAATTTGCATG 9288 Score = 91.5 bits (100), Expect = 9e-14 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| ||||| |||||||| || || ||||| || || || ||||| || Sbjct 8833 CCACCGCGAAGTCGCAATACCAAATGAAGCGTAGATTCCTTCTGGATATTGTAATCAGAT 8892 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | |||||||| || || || || || || | ||||| ||||| || || Sbjct 8893 AAAGTACGACCATCTTCAAGCTGCTTTCCTGCGAAAATGAGTCGCTGCTGGTCTGGTGGA 8952 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCT-TCGCTCTCCAC 34658 | || ||||| || |||||| ||||| | || || || | ||| || || Sbjct 8953 ATGCCTTCCTTATCCTGGATCTTAGCTTTTACGTTTTCGATAGTATCACTAGCT-TCAAC 9011 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| || || || || ||||| | ||||||||||||||||||||| Sbjct 9012 CTCCAACGTAATAGTCTTTCCGGTCAGAGTTTTCACAAAAATCTGCATG 9060 Score = 89.7 bits (98), Expect = 3e-13 Identities = 155/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||| | ||| || || ||||| || ||||| ||||| |||||||| || Sbjct 8614 AGACGGAGCACGAGATGTAGCGTAGATTCCTTCTGTATGTTGTAATCAGAAAGTGTGCGA 8673 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | || ||||| |||||||| | || ||||| || || || | || || Sbjct 8674 CCATCTTCCAACTGCTTACCAGCAAATATCAGCCGTTGTTGATCTGGAGGGATGCCTTCT 8733 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCT-TCGCTCTCCACTTCCACGG 34666 || || ||| ||| | ||| ||| | || || || | ||| || ||||| | | Sbjct 8734 TTATCC-TGAATTTTAGCTTTCACGTTTTCGATGGTATCGCTAGCT-TCAACTTCGAGAG 8791 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || ||||| || || ||||| ||||| ||||||||||| Sbjct 8792 TAATGGTTTTGCCAGTCAACGTCTTCACGAAAATCTGCAT 8831 Score = 86.0 bits (94), Expect = 4e-12 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | ||| ||||| || | ||| | ||| ||||| |||||||| || ||||| Sbjct 9288 GCCACCGCGAAGCCGCAAAACAAGATGCAATGTGGATTCCTTCTGAATGTTGTAGTCTGA 9347 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | || || | || || | ||| || || || || || |||||||| || || ||||| Sbjct 9348 CAACGTGCGACCATCCTCTAATTGCTTTCCAGCGAAAATCAAACGCTGCTGATCTGGCGG 9407 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCT-TCGCTCTCC 34656 | ||| ||||| ||| || ||| | || || | ||| ||||| | ||| || Sbjct 9408 GATTCCTTCCTTATCTTGTAT-TTTCGCCTTCACATTCTCAATCGTGTCGCTGGCT-TCA 9465 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | ||| || || || || || | || ||||||||||||||||| Sbjct 9466 ACCTCGAGGGTAATTGTCTTGCCCGTAAGAGTCTTCACAAAAATCTGCAT 9515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314399405669339