Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq13344 149 5e-31 seq4653 149 5e-31 >seq13344 Length=17380 Score = 149 bits (164), Expect = 5e-31 Identities = 173/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || |||| || ||| | || || ||||| || ||||| || Sbjct 12187 ATGCAAATCTTCGTTAAGACCTTGACTGGGAAGACCATCACGCTTGAGGTAGAACCTTCG 12128 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || ||| |||||||||||| |||||||| || || || |||||| Sbjct 12127 GACACCATCGAGAATGTAAAAGCAAAAATTCAAGATAAAGAAGGAATTCCTCCTGATCAA 12068 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCG-TTTCCGATTACAA 27166 |||||| |||| | ||| || || || | |||||| | |||| || | || || ||||| Sbjct 12067 CAGCGTCTAATTTTCGCTGGAAAGCAGCTCGAAGAC-GGTCGAACGCTCTCGGACTACAA 12009 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||| || | ||| | ||| ||||| |||| ||||| || Sbjct 12008 CATACAGAAGGAGTCTACACTTCATCTCGTTCTGCGTCTGCGAGGTGGTAT 11958 >seq4653 Length=38373 Score = 149 bits (164), Expect = 5e-31 Identities = 173/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||| || |||||| | ||||| || || || ||| | | Sbjct 9515 ATGCAGATTTTTGTGAAGACTCTTACGGGCAAGACAATTACCCTCGAGGTTGAAGCCAGC 9456 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||||| || || ||||| ||||| || ||||| || || || ||||| Sbjct 9455 GACACGATTGAGAATGTGAAGGCGAAAATACAAGATAAGGAAGGAATCCCGCCAGATCAG 9396 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 |||||||| || | ||| || || ||||| || || || || |||| || || ||||| Sbjct 9395 CAGCGTTTGATTTTCGCTGGAAAGCAATTAGAGGATGGT-CGCACGTTGTCAGACTACAA 9337 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| ||||| || || || ||| | |||||||| | || |||||||| Sbjct 9336 CATTCAGAAGGAATCCACATTGCATCTTGTTTTGCGGCTTCGCGGTGGCAT 9286 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| ||||| | |||||||| ||||| ||| | | Sbjct 8831 ATGCAGATTTTCGTGAAGACGTTGACTGGCAAAACCATTACTCTCGAAGTTGAAGCTAGC 8772 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || ||| |||||||| || ||||||||||| || || |||||| Sbjct 8771 GATACCATCGAAAACGTGAAAGCTAAAATTCAGGATAAAGAAGGCATCCCTCCAGATCAA 8712 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || | |||| || || || || |||||||| || || |||| ||||||||| Sbjct 8711 CAACGGCTGATATTTGCTGGTAAGCAGTTGGAAGATGGTCGCACACTTTCTGATTACAAC 8652 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || ||||| || || ||||| | || | ||| |||| ||||| Sbjct 8651 ATACAGAAGGAATCTACGCTACATCTCGTGCTCCGTCTGCGCGGTGG 8605 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| |||||||||||||| ||| ||||||| | || || ||| | Sbjct 9060 CATGCAGATTTTTGTGAAAACTCTGACCGGAAAGACTATTACGTTGGAGGTTGAAGCTAG 9001 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | || || | || ||| || || || || || |||||||| ||||| || || Sbjct 9000 TGATACTATCGAAAACGTAAAAGCTAAGATCCAGGATAAGGAAGGCATTCCACCAGACCA 8941 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | ||| || || || | ||||| || || | || |||||||| Sbjct 8940 GCAGCGACTCATTTTCGCAGGAAAGCAGCTTGAAGATGGTCGTACTTTATCTGATTACAA 8881 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||| || || | |||||||| ||||| | || ||||| || Sbjct 8880 TATCCAGAAGGAATCTACGCTTCATTTGGTATTGCGACTTCGCGGTGGGAT 8830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434450411492160