Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq4653 98.7 7e-16 >seq4653 Length=38373 Score = 98.7 bits (108), Expect = 7e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||||||||| |||||||| || || ||||| | || || ||| || | Sbjct 9515 ATGCAGATTTTTGTGAAGACTCTTACGGGCAAGACAATTACCCTCGAGGTTGAAGCCAGC 9456 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | ||||| | ||| || || |||||| || || ||||| | ||| || | Sbjct 9455 GACACGATTGAGAAT--GTGAAGGCGAAAATACAAGATAAGGAAGGAATCCCGCCAGATC 9398 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || || ||||| || ||||| ||||| || || | |||| ||||| || |||| Sbjct 9397 AGCAGCGTTTGATTTTCGCTGGAAAGCAATTAGAGGATGGTCGCACGTTGTCAGACTACA 9338 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||| || || || ||| |||||| | |||||||| | || || ||| Sbjct 9337 ACATTCAGAAGGAATCCACATTGCATCTTGTTTTGCGGCTTCGCGGTGGC 9288 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 || || |||||| | || ||| |||||||| | |||||||| || || || | || Sbjct 9194 GATAAGGAAGGTATCCCACCGGATCAGCAACGACTGATTTTTGCTGGCAAGCAGCTCGAG 9135 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | |||| ||||||||||| ||||||||||||||| || |||| |||| | Sbjct 9134 GATGGTCGCACATTGTCCGATTATAACATCCAAAAAGAGTCTACGCTGCACCTGGTGCTC 9075 Query 28003 CGTTTGCGTGGCGGC 28017 |||||||| || ||| Sbjct 9074 CGTTTGCGAGGTGGC 9060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355489051744941