Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq4653 150 4e-31 seq13344 140 8e-28 >seq4653 Length=38373 Score = 150 bits (166), Expect = 4e-31 Identities = 168/222 (76%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||||| | || | ||||| || || || || ||||| || ||||| | | || Sbjct 8839 CGAAGTCGCAATACCAAATGAAGCGTAGATTCCTTCTGGATATTGTAATCAGATAAAGTA 8898 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | |||||||| |||||||| |||||||| || || || || ||||| || |||| ||| Sbjct 8899 CGACCATCTTCAAGCTGCTTTCCTGCGAAAATGAGTCGCTGCTGGTCTGGTGGAATGCCT 8958 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCA-GAGCTTTCAACCTCGAG 211072 ||||| ||||||||||| ||| ||||||||||| || ||| ||| ||||||||| | Sbjct 8959 TCCTTATCCTGGATCTTAGCTTTTACGTTTTCGATAGTATCACTAGC-TTCAACCTCCAA 9017 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || |||||||| || ||||| || ||||| | |||||| Sbjct 9018 CGTAATAGTCTTTCCGGTCAGAGTTTTCACAAAAATCTGCAT 9059 Score = 134 bits (148), Expect = 3e-26 Identities = 159/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || || || || || || || ||||| ||||| | ||| || | |||||| Sbjct 8620 AGCACGAGATGTAGCGTAGATTCCTTCTGTATGTTGTAATCAGAAAGTGTGCGACCATCT 8679 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||| || || || || || |||||||| || ||||| | ||||| || ||| Sbjct 8680 TCCAACTGCTTACCAGCAAATATCAGCCGTTGTTGATCTGGAGGGATGCCTTCTTTATCC 8739 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTC-AGAGCTTTCAACCTCGAGAGTGATCGT 211081 || || || |||||||||||||||||| || ||| |||||| |||||||| || || Sbjct 8740 TGAATTTTAGCTTTCACGTTTTCGATGGTATCGCTAGC-TTCAACTTCGAGAGTAATGGT 8798 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||| || || | |||||| Sbjct 8799 TTTGCCAGTCAACGTCTTCACGAAAATCTGCAT 8831 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||||||||||||||||||||| | | || | ||||| Sbjct 9076 AGCACCAGGTGCAGCGTAGACTCTTTTTGGATGTTATAATCGGACAATGTGCGACCATCC 9135 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || || || || ||||| || || || || | |||||||| || Sbjct 9136 TCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGCTGATCCGGTGGGATACCTTCCTTATCT 9195 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || ||||||||||| || || ||| ||| || || ||||| || || Sbjct 9196 TGGATTTTAGCCTTCACGTTTTCAATCGTATCACTTGCTTCCACTTCCAGAGTTATTGTT 9255 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | || || ||||| | ||||| Sbjct 9256 TTACCTGTCAACGTTTTGACAAAAATTTGCAT 9287 Score = 107 bits (118), Expect = 4e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 ||||| || | ||||| || || || ||||| || || | | || | ||||| || Sbjct 9307 ACAAGATGCAATGTGGATTCCTTCTGAATGTTGTAGTCTGACAACGTGCGACCATCCTCT 9366 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 | ||||| || ||||| || | || || || || || || | ||||||||| || || Sbjct 9367 AATTGCTTTCCAGCGAAAATCAAACGCTGCTGATCTGGCGGGATTCCTTCCTTATCTTGT 9426 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 || || ||||| || || || ||||| | |||||||||||| || || ||||| Sbjct 9427 ATTTTCGCCTTCACATTCTCAATCGTGTCGCTGGCTTCAACCTCGAGGGTAATTGTCTTG 9486 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| |||||||| ||||| | |||||| Sbjct 9487 CCCGTAAGAGTCTTCACAAAAATCTGCAT 9515 >seq13344 Length=17380 Score = 140 bits (154), Expect = 8e-28 Identities = 175/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 210875 GGGTTAGCTAATATTTCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGAT 210934 ||||| | ||||| | || || | || || || ||||| || ||||| || || || Sbjct 11948 GGGTTCGATAATACCACCTCGCAGACGCAGAACGAGATGAAGTGTAGACTCCTTCTGTAT 12007 Query 210935 GTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTG 210994 ||| || |||| || || | || ||||| |||||||| || ||||| || || || || Sbjct 12008 GTTGTAGTCCGAGAGCGTTCGACCGTCTTCGAGCTGCTTTCCAGCGAAAATTAGACGCTG 12067 Query 210995 TTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTC 211054 ||| |||||||||| |||||| || || || || ||| ||| || || ||||||||||| Sbjct 12068 TTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTGCTTTTACATTCTCGATGGTGTC 12127 Query 211055 AGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||| ||||| || ||||| ||||| || || | ||||| || || | ||||| Sbjct 12128 CGAAGGTTCTACCTCAAGCGTGATGGTCTTCCCAGTCAAGGTCTTAACGAAGATTTGCAT 12187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1157873526704295