Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq13344 113 3e-20 seq4653 111 1e-19 >seq13344 Length=17380 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || |||||||| ||| | || || || || ||||| || || || || | || Sbjct 12187 ATGCAAATCTTCGTTAAGACCTTGACTGGGAAGACCATCACGCTTGAGGTAGAACCTTCG 12128 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | ||||| ||||||| || |||||||| | || || |||||| Sbjct 12127 GACACCATCGAGAATGTAAAAGCAAAAATTCAAGATAAAGAAGGAATTCCTCCTGATCAA 12068 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| |||| || || || || || || ||||||| || || | || |||||| Sbjct 12067 CAGCGTCTAATTTTCGCTGGAAAGCAGCTCGAAGACGGTCGAACGCTCTCGGACTACAAC 12008 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||| || ||||| ||| | ||| | ||| | | ||||||| || Sbjct 12007 ATACAGAAGGAGTCTACACTTCATCTCGTTCTGCGTCTGCGAGGTGG 11961 >seq4653 Length=38373 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || | || || ||||| || |||||||||||||| | | Sbjct 8831 ATGCAGATTTTCGTGAAGACGTTGACTGGCAAAACCATTACTCTCGAAGTTGAAGCTAGC 8772 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | |||| | ||| |||||| || |||||||| | || ||||||||| Sbjct 8771 GATACCATCGAAAACGTGAAAGCTAAAATTCAGGATAAAGAAGGCATCCCTCCAGATCAA 8712 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || | |||||||| || || || ||||||| | ||||| | ||||||||| Sbjct 8711 CAACGGCTGATATTTGCTGGTAAGCAGTTGGAAGATGGTCGCACACTTTCTGATTACAAC 8652 Query 23791 ATACAAAAAGAGTCCACATTACAT 23814 ||||| || || || || ||||| Sbjct 8651 ATACAGAAGGAATCTACGCTACAT 8628 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || || ||||| || || || || ||||| ||||| ||| Sbjct 9515 ATGCAGATTTTTGTGAAGACTCTTACGGGCAAGACAATTACCCTCGAGGTTGAAGCCAGC 9456 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | |||| | || || ||||| | ||||||||||| Sbjct 9455 GACACGATTGAGAATGTGAAGGCGAAAA-TACAAGATAAGGAAGGAATCCCGCCAGATCA 9397 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||||| || || || || || ||| | || || | ||||| || || ||||| Sbjct 9396 GCAGCGTTTGATTTTCGCTGGAAAGCAATTAGAGGATGGTCGCACGTTGTCAGACTACAA 9337 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 ||| || || || |||||||| ||| | ||||| Sbjct 9336 CATTCAGAAGGAATCCACATTGCATCTTGTTTT 9304 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || ||||| | || || ||||| || ||||| ||||| || | | Sbjct 9287 ATGCAAATTTTTGTCAAAACGTTGACAGGTAAAACAATAACTCTGGAAGTGGAAGCAAGT 9228 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| | || ||||| || || |||||| | || || ||||| Sbjct 9227 GATACGATTGAAAACGTGAAGGCTAAAATCCAAGATAAGGAAGGTATCCCACCGGATCAG 9168 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || | || ||||| ||||| || || || || | ||||| || |||||| ||| Sbjct 9167 CAACGACTGATTTTTGCTGGCAAGCAGCTCGAGGATGGTCGCACATTGTCCGATTATAAC 9108 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||||||||| || Sbjct 9107 ATCCAAAAAGAGTCTAC 9091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337654981770164