Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq4653 131 4e-25 seq13344 127 5e-24 seq9744 93.3 1e-13 >seq4653 Length=38373 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || || || |||||||||| || ||||||| ||| || | ||||| Sbjct 9076 AGCACCAGGTGCAGCGTAGACTCTTTTTGGATGTTATAATCGGACAATGTGCGACCATCC 9135 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| || || |||||||| || || || || ||||||||||| ||| Sbjct 9136 TCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGCTGATCCGGTGGGATACCTTCCTTATCT 9195 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| || |||||| ||| || || || | |||||| || | || || || Sbjct 9196 TGGATTTTAGCCTTCACGTTTTCAATCGTATCACTTGCTTCCACTTCCAGAGTTATTGTT 9255 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| ||||| | || | |||||| Sbjct 9256 TTACCTGTCAACGTTTTGACAAAAATTTGCAT 9287 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || ||||| || | |||||||| || || | ||||| || | ||| || Sbjct 9295 CGAAGCCGCAAAACAAGATGCAATGTGGATTCCTTCTGAATGTTGTAGTCTGACAACGTG 9354 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| |||| ||||| |||||||| || | || || || || ||||| || ||| Sbjct 9355 CGACCATCCTCTAATTGCTTTCCAGCGAAAATCAAACGCTGCTGATCTGGCGGGATTCCT 9414 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||| ||||| || || ||||||| || || ||||| || ||| || || | Sbjct 9415 TCCTTATCTTGTATTTTCGCCTTCACATTCTCAATCGTGTCGCTGGCTTCAACCTCGAGG 9474 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTT 225698 || || ||||||||||| | ||| || Sbjct 9475 GTAATTGTCTTGCCCGTAAGAGTCTT 9500 >seq13344 Length=17380 Score = 127 bits (140), Expect = 5e-24 Identities = 163/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || || || || || || || || || | ||||| || | | ||| Sbjct 11967 CGCAGACGCAGAACGAGATGAAGTGTAGACTCCTTCTGTATGTTGTAGTCCGAGAGCGTT 12026 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || ||||| |||||||| |||||||| || || || ||||| || || ||||| ||| Sbjct 12027 CGACCGTCTTCGAGCTGCTTTCCAGCGAAAATTAGACGCTGTTGATCAGGAGGAATTCCT 12086 Query 225613 TCCTTGTCTTGGATCTTTTGCTTC-ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || || ||||| || |||||||| ||| ||||||||||| || | ||| || || | Sbjct 12087 TCTTTATCTTGAAT-TTTTGCTTTTACATTCTCGATGGTGTCCGAAGGTTCTACCTCAAG 12145 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| ||||| || ||||| || || | ||| | |||||| Sbjct 12146 CGTGATGGTCTTCCCAGTCAAGGTCTTAACGAAGATTTGCAT 12187 >seq9744 Length=22807 Score = 93.3 bits (102), Expect = 1e-13 Identities = 75/91 (82%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 5017 CACTTCAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATG 5076 ||||||||||| | || ||||| | || |||| ||| || ||||||||| |||||| | Sbjct 22192 CACTTCAATACTTGGCTCCATATTCTGGGTGTGCTATGGGTGAATATTTTCGAGATAGCG 22251 Query 5077 GTAAACATGCTTTAATCATCTACGATGATTT 5107 | || ||||||||||||||||| |||||||| Sbjct 22252 GAAAGCATGCTTTAATCATCTATGATGATTT 22282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191215911501602