Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq2508 192 5e-44 >seq2508 Length=53929 Score = 192 bits (212), Expect = 5e-44 Identities = 595/921 (65%), Gaps = 76/921 (8%) Strand=Plus/Plus Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331 || || || |||||||||||||| ||||||||||| || ||||| ||||| || || ||| Sbjct 44958 ACACGTTTCTCGAAGAAATTAGTCTTGCCTTCTAAAGATATATTCTCCATGAAGTCGAAC 45017 Query 4332 GGATTAGTTGCGTTGTAAT-----------GTTTT---TCAC------ACTT-------- 4363 || || ||||| |||| ||| | | || |||| Sbjct 45018 GGGTTTTCAGCGTTATAATACTGCAAAACGGTTATGGATAACTATGGAACTTACCTTCCC 45077 Query 4364 -TA---GAGCT--ACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTC 4417 || ||||| |||||||| |||||||| ||||| || | ||||||| ||| | | Sbjct 45078 ATATCCGAGCTCGACAAGCAAGCGGTCAGCGACAAACTCAACGTACTGGCACATCAACTT 45137 Query 4418 GCAGTTAATTCCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGT 4477 |||||| || || || | || ||||| || |||| || || | ||||| | Sbjct 45138 GCAGTTCATGCCTATCAGGCTGACAGGAAGAGCGTCCCCGAAGAATTTGTGTTCCACTTC 45197 Query 4478 TACGGCTTCTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCC 4537 ||||| || | || || | | ||| | || || || || |||| ||| Sbjct 45198 CACGGCATCCTTCATAATCGCGATAGCCCGCTCTCTGGAAGGCTTGTTAACTATGTACTT 45257 Query 4538 AAACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGA 4597 |||| | || | ||||| |||| ||| || |||| ||||| ||||| ||| Sbjct 45258 GAACAGCATGCAAGAGAAATCCGTGTGCAGACCCTCATCTCGACTAATGAGTTCATTACT 45317 Query 4598 AAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCC 4657 || ||||| |||||||| | |||| |||||| ||||||||||| || || || || Sbjct 45318 GAAGGTTAAACCGGGCATGAGGCCTCGCTTTTTGAGCCAAAATATCGCAGCGAAGCTTCC 45377 Query 4658 AGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGC 4717 || || |||| ||| || || || ||| | || || | || ||| || | | | | Sbjct 45378 CGAGAAAAATACGCCCTCAACTGCTGCATAGGCCACCAGTCTCTCCCCAAAGGTG--GAC 45435 Query 4718 TT--TGTCTTTAATCCATTTTAATGCCCAGTTAGCTTT-------------------TTT 4756 || |||| |||||| |||| ||||| | || || ||| Sbjct 45436 TTCGTGTCACCAATCCAATTTAGAGCCCATTGGGCCTTGCGTTCCACACATTCTAGGTTT 45495 Query 4757 CTTAACGCACG------GAATTGTGT-----ATATAGCGTTAAAT----AATTTACTTTT 4801 | || ||| ||| | | ||| ||| || | ||||||| || Sbjct 45496 CGTATAGCATTAAACAAGAAGTCACTGAACGATAGAGCAGCAAGTTATCAATTTACCGTT 45555 Query 4802 TTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATT 4861 | | ||||||| || || |||||||| ||||| | ||||||||||||||| ||||| Sbjct 45556 CTTTA--GGGTCTTTGATGTACGTGTCTATAAGTAGACAATACATTTCAGAATGGATATT 45613 Query 4862 TTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACA 4921 || | ||||| || | ||| |||||||| | ||||| | | |||||| || | || Sbjct 45614 CTCCACGGCAATTTGCATTCCATAAAAGCAGCGCGCTTCAGGAATTTGAACCTCTTGACT 45673 Query 4922 AAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAAC 4981 |||| || | | |||||| || |||||||| ||||| ||||||||||||| || Sbjct 45674 GAATCGCTCGAGCAGATTTTCGAGGACGATACCGTCGCTGGCGGCAAAAAACGCCAGGAC 45733 Query 4982 ATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGT 5041 | |||||| |||| | || | ||| | | || ||| | || || ||| || | Sbjct 45734 GTAAGATATGAAGTGGCGCTCTCCCACCTTTAATCGTTCCCAATCGGTCAGATCCTTTGA 45793 Query 5042 TAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTA-CATAGACCAAA 5100 | ||| ||||| |||||||||||||| || || | || |||||||| || | ||| | Sbjct 45794 AAGATCGACTTCCTCAACAGTCCAAAAGGAGGCCACTGCCTTTTTGTAGTATTG-CCATA 45852 Query 5101 TATCAGGATACTGAATCGGAA 5121 | || ||||||||| |||| Sbjct 45853 TTTCGTTATACTGAATAGGAA 45873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426601566650639