Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq18034 118 1e-21 seq2508 105 9e-18 >seq18034 Length=13003 Score = 118 bits (130), Expect = 1e-21 Identities = 185/260 (71%), Gaps = 6/260 (2%) Strand=Plus/Plus Query 78312 GCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCAT-GTTAAGAAG 78370 ||||| | |||||||||||||| ||||| || ||||| || ||| |||| || || ||| Sbjct 11202 GCGCATTGCTTCAATGTATCGTAAATACCTTCGATACTATCTTCCTTCATCGTCAACAAG 11261 Query 78371 AAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATG 78430 |||||||| |||| || | | | ||||| ||||| || || ||||| || || || Sbjct 11262 -AAACAGCTGGACAGCTGCGGTTTAGGTGTTCCGGCATTGAACAACGTCGGGGAGGCGTG 11320 Query 78431 CGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTC--CCAT 78488 || ||||| ||||| || | || ||||| ||||| || ||| || || || |||| Sbjct 11321 TGTGAACCACTTTTCGGACATAAGGTTGTAGGTTTCGATTGCTCCATCGATATCGTCCAT 11380 Query 78489 TGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTA 78548 |||||| || | | || ||||| | |||||| ||||| | ||| | | ||| Sbjct 11381 --ATGAATCCCAATTGACACGCGCATTACCATATGTTGAGGACGTTCGTACACTTCATTC 11438 Query 78549 TTTATTTTCAACAAGTATGA 78568 || ||||| | | |||||| Sbjct 11439 TTAATTTTTAGAAGGTATGA 11458 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 77733 ATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTA 77792 || || || || |||||||| || ||||| || ||||| || |||||||||||||| Sbjct 8936 ATTTCAGTGCACAGATTACTGCACTTGATCGTTCCCAGGTTCTGTTGGTTGCTCTTGCGG 8995 Query 77793 TTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAAT 77851 ||||||| |||||| ||||| || |||||| | || |||||||| || | || ||||| Sbjct 8996 TTGCATGCGTCCTTGTAAAGCATGAACGGATTACCCGTTTCAATTTGAGCTTGAATAAT 9054 >seq2508 Length=53929 Score = 105 bits (116), Expect = 9e-18 Identities = 393/612 (64%), Gaps = 57/612 (9%) Strand=Plus/Plus Query 48156 TGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCA 48215 || ||||| ||||||| |||||| | ||| ||| || || | ||||||||| || || Sbjct 45283 TGCAGACCCTCATCTCGACTAATGAGTTCATTACTGAAGGTTAAACCGGGCATGAGGCCT 45342 Query 48216 CGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCC 48275 || ||||||||||||||||| || ||||| ||| || || |||| ||| || || || Sbjct 45343 CGCTTTTTGAGCCAAAATATCGCAGCGAAGCTTCCCGAGAAAAATACGCCCTCAACTGCT 45402 Query 48276 GCAAATGCGGTAAGTCTCTCTCCGTAACTGG-CTTCGTTGT---GTATCCACCGTTGTGC 48331 ||| | || |||||||| || | ||| ||||| ||| ||||| | | || Sbjct 45403 GCATAGGCCACCAGTCTCTCCCCAAAGGTGGACTTCG-TGTCACCAATCCAATTTAGAGC 45461 Query 48332 CCAATCAGCCTTCTTCTTTACACAAGGCATT----GTTTC-TATAGCATTAAA------- 48379 ||| | |||| | | || |||| |||| ||||| |||||||||||| Sbjct 45462 CCATTGGGCCT--TGCGTTCCACA---CATTCTAGGTTTCGTATAGCATTAAACAAGAAG 45516 Query 48380 ----------------GAGAAAGtt-----ttt----ttCATTGCTATCTTTAACGTAAG 48414 || ||||| ||| ||| || ||||| | ||| | Sbjct 45517 TCACTGAACGATAGAGCAGCAAGTTATCAATTTACCGTTCTTTAGGGTCTTTGATGTACG 45576 Query 48415 TATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGT 48474 | ||||| | |||| ||||||||| || || ||||| || | || || || | ||| | Sbjct 45577 TGTCTATAAGTAGACAATACATTTCAGAATGGATATTCTCCACGGCAATTTGCATTCCAT 45636 Query 48475 AAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCAT 48534 |||| || | |||||| | || || ||||| || ||||| || || ||| || Sbjct 45637 AAAAGCAGCGCGCTTCAGGAATTTGAACCTCTTGACTGAATCGCTCGAGCAGATTTTCGA 45696 Query 48535 TTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGT 48594 || || || || || || |||||||| || | || ||| | | | | || Sbjct 45697 GGACGATACCGTCGCTGGCGGCAAAAAACGCCAGGAC----GTAAGATATGAAGTGGCGC 45752 Query 48595 TGGAAGTCAGTTTA----TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCT 48650 | | || | | ||| || | | ||| ||||| | ||| ||||| ||| | Sbjct 45753 TCTCCCACCTTTAATCGTTCCCAATCGGTCAGATCCTTTGAAAGATCGACTTCCTCAACA 45812 Query 48651 GTCCAAAATGATGCCTCTGCTTTTTTATACATATT-CCATATATCACTGTATTGGATTGG 48709 |||||||| || ||| |||| ||||| || |||| |||||| || | || || || || Sbjct 45813 GTCCAAAAGGAGGCCACTGCCTTTTTGTA-GTATTGCCATATTTCGTTATACTGAATAGG 45871 Query 48710 GAAAATAACAAA 48721 || | ||||| Sbjct 45872 AAAGAGCACAAA 45883 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 ||||| ||||| | |||||| || || |||||||||||||| |||||||| |||||| Sbjct 44928 GACATCACTCCAGCTCGTTGATAATCTCCAACACGTTTCTCGAAGAAATTAGTCTTGCCT 44987 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAA 47942 || || |||||||| ||||| || || || || || | || |||||| Sbjct 44988 TCTAAAGATATATTCTCCATGAAGTCGAACGGGTTTTCAGCGTTATAA 45035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693921310321120