Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2508 123 4e-23 seq18034 102 1e-16 >seq2508 Length=53929 Score = 123 bits (136), Expect = 4e-23 Identities = 397/611 (65%), Gaps = 55/611 (9%) Strand=Plus/Plus Query 46645 TGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCA 46704 || || || ||||||| |||||| | ||| ||| || || | || ||||| || || Sbjct 45283 TGCAGACCCTCATCTCGACTAATGAGTTCATTACTGAAGGTTAAACCGGGCATGAGGCCT 45342 Query 46705 CGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCC 46764 |||||||||||||||||||| || ||||| ||| || || |||| ||| || || || Sbjct 45343 CGCTTTTTGAGCCAAAATATCGCAGCGAAGCTTCCCGAGAAAAATACGCCCTCAACTGCT 45402 Query 46765 GCGAATGCGACAAGTCTCTCTCCGTAACTGG-CATC--ATTATGAATCCACCTTTGAGCC 46821 || | || || |||||||| || | ||| | || | | |||||| || ||||| Sbjct 45403 GCATAGGCCACCAGTCTCTCCCCAAAGGTGGACTTCGTGTCACCAATCCAATTTAGAGCC 45462 Query 46822 CAATCAGCCTTTTTCTTTACACAAGGCATT----GTTTC-TATAGCATTAAA-------- 46868 || | ||| || | || |||| |||| ||||| |||||||||||| Sbjct 45463 CATTGGGCC--TTGCGTTCCACA---CATTCTAGGTTTCGTATAGCATTAAACAAGAAGT 45517 Query 46869 ---------------GAGAAAGtt-----ttt----ttCATCACTATCTTTAACATATGT 46904 || ||||| ||| ||| | | ||||| | || || Sbjct 45518 CACTGAACGATAGAGCAGCAAGTTATCAATTTACCGTTCTTTAGGGTCTTTGATGTACGT 45577 Query 46905 ATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTA 46964 ||||| | |||| ||||||||| ||||| || || || | || || || | ||| || Sbjct 45578 GTCTATAAGTAGACAATACATTTCAGAATGGATATTCTCCACGGCAATTTGCATTCCATA 45637 Query 46965 AAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATT 47024 ||| || | ||||||| ||| || |||||| || ||||| || || ||| || Sbjct 45638 AAAGCAGCGCGCTTCAGGAATTTGAACCTCTTGACTGAATCGCTCGAGCAGATTTTCGAG 45697 Query 47025 CACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAAT----ATTTTT 47080 || || || || || || |||||||| |||| || | || || | | | Sbjct 45698 GACGATACCGTCGCTGGCGGCAAAAAACGCCAGGACGTAAGATATGAAGTGGCGCTCTCC 45757 Query 47081 CATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTG 47140 || | || || || | ||| || | | ||| ||||| | ||| ||||| ||| | | Sbjct 45758 CACCTTTAATC-GT---TCCCAATCGGTCAGATCCTTTGAAAGATCGACTTCCTCAACAG 45813 Query 47141 TCCAGAATGACGCCTCTGCTTTTTTATACATATT-CCATATATCACGATATTGGATCGGA 47199 |||| || || ||| |||| ||||| || |||| |||||| || ||| || || ||| Sbjct 45814 TCCAAAAGGAGGCCACTGCCTTTTTGTA-GTATTGCCATATTTCGTTATACTGAATAGGA 45872 Query 47200 AAAATAACAAA 47210 || | ||||| Sbjct 45873 AAGAGCACAAA 45883 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 46322 GTGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGC 46381 ||||||| ||||| | ||| || || || |||||||||||||| |||||||| |||| Sbjct 44926 GTGACATCACTCCAGCTCGTTGATAATCTCCAACACGTTTCTCGAAGAAATTAGTCTTGC 44985 Query 46382 CTTCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAA 46431 |||| || |||||||| ||||| || || ||||| || | | |||||| Sbjct 44986 CTTCTAAAGATATATTCTCCATGAAGTCGAACGGGTTTTCAGCGTTATAA 45035 >seq18034 Length=13003 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 76328 ATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTG 76387 || || ||||| |||||||| |||||||| ||||| || || |||||||||||||| | Sbjct 8936 ATTTCAGTGCACAGATTACTGCACTTGATCGTTCCCAGGTTCTGTTGGTTGCTCTTGCGG 8995 Query 76388 TTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAAT 76446 || |||| |||||| ||||| | |||||| | || |||||||| || | || ||||| Sbjct 8996 TTGCATGCGTCCTTGTAAAGCATGAACGGATTACCCGTTTCAATTTGAGCTTGAATAAT 9054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712167255850560