Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq13344 120 7e-22 seq4653 104 5e-17 >seq13344 Length=17380 Score = 120 bits (132), Expect = 7e-22 Identities = 156/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || |||||||| |||||||| || || |||||||| || | | |||| || ||| Sbjct 11976 AGAACGAGATGAAGTGTAGACTCCTTCTGTATGTTGTAGTCCGAGAGCGTTCGACCGTCT 12035 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| || ||||| || || | ||| || || | | |||||||| || | Sbjct 12036 TCGAGCTGCTTT--CCAGCGAAAATTAGACGCTGTTGATCAGGAGGAATTCCTTCTTTAT 12093 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 ||||||||||| ||| ||| |||| | | |||| ||| ||||| ||||| || || | Sbjct 12094 CTTGAATTTTTGCTTTTACATTCTCGATGGTGTCCGAAGGTTCTACCTCAAGCGTGATGG 12153 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || || | ||||| ||||||| ||||| Sbjct 12154 TCTTCCCAGTCAAGGTCTTAACGAAGATTTGCAT 12187 >seq4653 Length=38373 Score = 104 bits (114), Expect = 5e-17 Identities = 154/213 (72%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 |||||||| | || || || || || |||||||| || | || || | ||||| ||| Sbjct 9307 ACAAGATGCAATGTGGATTCCTTCTGAATGTTGTAGTCTGACAACGTGCGACCATCCTCT 9366 Query 151956 AG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTT 152013 | ||||| || ||||| || | | |||||| || | || |||||||||||| |||| Sbjct 9367 AATTGCTTT--CCAGCGAAAATCAAACGCTGCTGATCTGGCGGGATTCCTTCCTTATCTT 9424 Query 152014 GAATTTTTTGTTTGACAGTCTCTACGCTGT--CTGAACTCTCTACTTCAAGAGTAATAGT 152071 | ||||| || ||| |||| | ||| ||| || || || || || ||||| || Sbjct 9425 GTATTTTCGCCTTCACATTCTCAATCGTGTCGCTG-GCT-TCAACCTCGAGGGTAATTGT 9482 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||| ||||||||||| || | |||||| Sbjct 9483 CTTGCCCGTAAGAGTCTTCACAAAAATCTGCAT 9515 Score = 91.5 bits (100), Expect = 3e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || ||||| || ||||| || || || ||||||||||| | | || | ||||| Sbjct 8619 GAGCACGAGATGTAGCGTAGATTCCTTCTGTATGTTGTAATCAGAAAGTGTGCGACCATC 8678 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| | || || || || || |||| || || || | | ||| ||||| || || Sbjct 8679 TTCCAACTGCTTACCAGCAAATATCAGCCGTTGTTGATCTGGAGGGATGCCTTCTTTATC 8738 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 |||||||| ||| || | || | | | || | || ||||| |||||||| || Sbjct 8739 CTGAATTTTAGCTTTCACGTTTTCGATGGTATCGCTAGCTTCAACTTCGAGAGTAATGGT 8798 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||| || | ||||||||||| | |||||| Sbjct 8799 TTTGCCAGTCAACGTCTTCACGAAAATCTGCAT 8831 Score = 84.2 bits (92), Expect = 5e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || || || || |||||||||||||||||||| ||||||| || || | ||||| Sbjct 9075 GAGCACCAGGTGCAGCGTAGACTCTTTTTGGATGTTATAATCGGACAATGTGCGACCATC 9134 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || || || || || || | ||||| |||| | ||| |||||||| || Sbjct 9135 CTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGCTGATCCGGTGGGATACCTTCCTTATC 9194 Query 152012 TTGAATTTT 152020 ||| ||||| Sbjct 9195 TTGGATTTT 9203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1152548206689693