Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq2508 129 6e-25 >seq2508 Length=53929 Score = 129 bits (142), Expect = 6e-25 Identities = 358/544 (66%), Gaps = 44/544 (8%) Strand=Plus/Plus Query 23524 TGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCT 23583 || || || ||||| | |||||| | ||||||| || ||||| || ||||| | ||| Sbjct 45283 TGCAGACCCTCATCTCGACTAATGAGTTCATTACTGAAGGTTAAACCGGGCATGAGGCCT 45342 Query 23584 CGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCC 23643 || ||||| | ||||||||| ||||| || ||| || || || | |||||||| || Sbjct 45343 CGCTTTTTGAGCCAAAATATCGCAGCGAAGCTTCCCGAGAAAAATACGCCCTCAACTGCT 45402 Query 23644 GCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAAATCCAtttttttGTC 23703 ||| ||||||| || | ||||| || | || ||| |||||| ||| | | Sbjct 45403 GCATAGGCCACCAGTCTCTCCCCAAAGGTGGACTTCGTGTCACCAATCCAATTTAGAGCC 45462 Query 23704 CAATTAGCCTTCAATTTTACACACTCAATTGTTTCA-ATTGCTTTTAAGA---------- 23752 || | ||||| || ||||| || | ||||| || || || || | Sbjct 45463 CATTGGGCCTTGCGTTCCACACATTCTAG-GTTTCGTATAGCATTAAACAAGAAGTCACT 45521 Query 23753 GAA------------AAGTT-----TTTTC--TTCATTA---TCTGTTATATATGTATCA 23790 ||| ||||| ||| | ||| ||| ||| | || || || || Sbjct 45522 GAACGATAGAGCAGCAAGTTATCAATTTACCGTTCTTTAGGGTCTTTGATGTACGTGTCT 45581 Query 23791 ATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAA 23850 || |||| || ||||||||||||||| ||||| || | ||||| || | |||||||| Sbjct 45582 ATAAGTAGACAATACATTTCAGAATGGATATTCTCCACGGCAATTTGCATTCCATAAAAG 45641 Query 23851 CATCTAGCTTCAGACAATTGAACATCATTAAAAAATC-TTTTAGCTAAATTTTCGTTAAC 23909 || | ||||||| | |||||| || | | |||| | ||| | ||||||| || Sbjct 45642 CAGCGCGCTTCAGGAATTTGAACCTCTTGACTGAATCGCTCGAGC-AGATTTTCGAGGAC 45700 Query 23910 AATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATG----TCTTTCAT 23965 ||||| || || || ||||| || || || || || ||| || || ||| || Sbjct 45701 GATACCGTCGCTGGCGGCAAAAAACGCCAGGACGTAAGATATGAAGTGGCGCTCTCCCAC 45760 Query 23966 CAGTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCC 24025 | || |||| || |||||| | | ||| ||||| | ||| ||||| ||||| |||| Sbjct 45761 C--TT--TAATCGTTCCCAATCGGTCAGATCCTTTGAAAGATCGACTTCCTCAACAGTCC 45816 Query 24026 AAAA 24029 |||| Sbjct 45817 AAAA 45820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 520926859356200