Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq13344 113 3e-20 seq4653 102 6e-17 >seq13344 Length=17380 Score = 113 bits (124), Expect = 3e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167 || || |||| ||| | || || || ||||| || |||||| || |||||||| || Sbjct 11958 ATACCACCTCGCAGACGCAGAACGAGATGAAGTGTAGACTCCTTCTGTATGTTGTAGTCC 12017 Query 44168 GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAA 44227 | ||| || |||| || |||||||| || || || || | |||||| ||||| | | Sbjct 12018 GAGAGCGTTCGACCGTCTTCGAGCTGCTTTCCAGCGAAAATTAGACGCTGTTGATCAGGA 12077 Query 44228 GGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTC 44286 || | ||||| || || || || ||||| | ||| | |||||||| | | ||| Sbjct 12078 GGAATTCCTTCTTTATCTTGAATTTT-TGCTTTTACATTCTCGATGGTGTCCGAAGGTTC 12136 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| | ||| || ||||| || || | |||||| |||||||||||||| Sbjct 12137 TACCTCAAGCGTGATGGTCTTCCCAGTCAAGGTCTTAACGAAGATTTGCAT 12187 >seq4653 Length=38373 Score = 102 bits (112), Expect = 6e-17 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | || | ||| || || || | ||| ||||| || |||||||| Sbjct 9282 TTGCATGCCACCGCGAAGCCGCAAAACAAGATGCAATGTGGATTCCTTCTGAATGTTGTA 9341 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | | ||| | || || | ||||| || || || ||||||||||||||||| Sbjct 9342 GTCTGACAACGTGCGACCATCCTCTAATTGCTTTCCAGCGAAAATCAAACGCTGCTGATC 9401 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 || || | |||||||| || ||| ||| ||||| | | || |||||| || Sbjct 9402 TGGCGGGATTCCTTCCTTATCTTGTATTTTCGCCTTCACATTCTCAATCGTGTCGCTGGC 9461 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| ||||| | ||||| ||||| ||||| || |||||||| || || ||||| Sbjct 9462 TTCAACCTCGAGGGTAATTGTCTTGCCCGTAAGAGTCTTCACAAAAATCTGCAT 9515 Score = 98.7 bits (108), Expect = 7e-16 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||| || | | ||||||||| ||||| ||| ||||||||||| ||||| Sbjct 9057 CATGCCACCTCGCAAACGGAGCACCAGGTGCAGCGTAGACTCTTTTTGGATGTTATAATC 9116 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || | | ||| | || || |||||||| || ||||| |||| || |||||||| | Sbjct 9117 GGACAATGTGCGACCATCCTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGCTGATCCGG 9176 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | ||||||||| || || || ||||| || | || || || | ||| Sbjct 9177 TGGGATACCTTCCTTATCTTGGATTTTAGCCTTCACGTTTTCAATCGTATCACTTGCTTC 9236 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||| |||| || || || || || || | || || || || ||||||||| Sbjct 9237 CACTTCCAGAGTTATTGTTTTACCTGTCAACGTTTTGACAAAAATTTGCATG 9288 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| || || ||||| ||||| || ||||||||||| | ||| ||| | || || Sbjct 8622 CACGAGATGTAGCGTAGATTCCTTCTGTATGTTGTAATCAGAAAGTGTGCGACCATCTTC 8681 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || |||||| || ||||| |||| || || ||||||| ||| | ||||| || ||| Sbjct 8682 CAACTGCTTACCAGCAAATATCAGCCGTTGTTGATCTGGAGGGATGCCTTCTTTATCCTG 8741 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 || || |||| || | ||||| ||| | ||| || || | ||||| || || Sbjct 8742 AATTTTAGCTTTCACGTTTTCGATGGTATCGCTAGCTTCAACTTCGAGAGTAATGGTTTT 8801 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | ||||||||||| || ||||| Sbjct 8802 GCCAGTCAACGTCTTCACGAAAATCTGCAT 8831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359612720909211