Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq13344 140 8e-28 seq4653 140 8e-28 >seq13344 Length=17380 Score = 140 bits (154), Expect = 8e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || | || || || || ||||| || ||||| ||| || ||| Sbjct 12184 CAAATCTTCGTTAAGACCTTGACTGGGAAGACCATCACGCTTGAGGTAGAACCTTCGGAC 12125 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || ||| ||| ||||| || ||||||||||| ||||| || || || Sbjct 12124 ACCATCGAGAATGTAAAAGCAAAAATTCAAGATAAAGAAGGAATTCCTCCTGATCAACAG 12065 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| ||||| ||||||||||| || | || || | || || ||| | Sbjct 12064 CGTCTAATTTTCGCTGGAAAGCAGCTCGAAGACGGTCGAACGCTCTCGGACTACAACATA 12005 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || || || || ||||| ||||| ||| || Sbjct 12004 CAGAAGGAGTCTACACTTCATCTCGTTCTG 11975 >seq4653 Length=38373 Score = 140 bits (154), Expect = 8e-28 Identities = 162/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCT-CAGA 177982 || ||||| ||||||||||| || ||||| || || || | ||||| | ||||| || Sbjct 9056 CAGATTTTTGTGAAAACTCTGACCGGAAAGACTATTACGTTGGAGGTTG-AAGCTAGTGA 8998 Query 177983 CACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 || ||||| ||||| ||| ||||| ||||| || ||||| || || || |||||||| Sbjct 8997 TACTATCGAAAACGTAAAAGCTAAGATCCAGGATAAGGAAGGCATTCCACCAGACCAGCA 8938 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102 ||||| || ||||| ||||| ||||| |||||||| | ||| | | ||||| || | Sbjct 8937 GCGACTCATTTTCGCAGGAAAGCAGCTTGAAGATGGTCGTACTTTATCTGATTACAATAT 8878 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||| || ||||| || || ||| | || ||| |||| Sbjct 8877 CCAGAAGGAATCTACGCTTCATTTGGTATTGCGACT 8842 Score = 132 bits (146), Expect = 1e-25 Identities = 155/207 (75%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCT-CAGA 177982 || ||||||||||| || | || || ||||| || || ||||| || | ||||| || Sbjct 8828 CAGATTTTCGTGAAGACGTTGACTGGCAAAACCATTACTCTCGAAGTTG-AAGCTAGCGA 8770 Query 177983 CACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 |||||||| ||||| ||| || |||||||| |||||||| |||||||| || || || Sbjct 8769 TACCATCGAAAACGTGAAAGCTAAAATTCAGGATAAAGAAGGCATCCCTCCAGATCAACA 8710 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102 ||| || || || || || || ||| | |||||||| | || ||| | ||||| ||| | Sbjct 8709 ACGGCTGATATTTGCTGGTAAGCAGTTGGAAGATGGTCGCACACTTTCTGATTACAACAT 8650 Query 178103 CCAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| || || ||||| || Sbjct 8649 ACAGAAGGAATCTACGCTACATCTCGT 8623 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| | ||||| ||||| || || || || |||||| || Sbjct 9284 CAAATTTTTGTCAAAACGTTGACAGGTAAAACAATAACTCTGGAAGTGGAAGCAAGTGAT 9225 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || || || || || || ||||| ||||| ||||| |||||| Sbjct 9224 ACGATTGAAAACGTGAAGGCTAAAATCCAAGATAAGGAAGGTATCCCACCGGATCAGCAA 9165 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| || || || || || |||||||| ||||| | || | ||||||||||| || Sbjct 9164 CGACTGATTTTTGCTGGCAAGCAGCTCGAGGATGGTCGCACATTGTCCGATTATAACATC 9105 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 |||||||| || || ||||| || || Sbjct 9104 CAAAAAGAGTCTACGCTGCACCTGGT 9079 Score = 118 bits (130), Expect = 3e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||| ||||| || || || || || ||||||||||| ||| | ||| Sbjct 9512 CAGATTTTTGTGAAGACTCTTACGGGCAAGACAATTACCCTCGAGGTTGAAGCCAGCGAC 9453 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || || || || || || ||||||||||| || || ||||| Sbjct 9452 ACGATTGAGAATGTGAAGGCGAAAATACAAGATAAGGAAGGAATCCCGCCAGATCAGCAG 9393 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| ||||| || | || ||||| | || | | || || ||| | Sbjct 9392 CGTTTGATTTTCGCTGGAAAGCAATTAGAGGATGGTCGCACGTTGTCAGACTACAACATT 9333 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || || ||||| ||| |||||||||||||| Sbjct 9332 CAGAAGGAATCCACATTGCATCTTGTTTTG 9303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202403558591102