Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq4653 116 3e-21 seq13344 102 8e-17 >seq4653 Length=38373 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | ||| ||||| ||||| |||||||| ||||| || || || Sbjct 8605 CCACCGCGCAGACGGAGCACGAGATGTAGCGTAGATTCCTTCTGTATGTTGTAATCAGAA 8664 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || | |||||| || || |||||||| || ||||| || | || Sbjct 8665 AGTGTGCGACCATCTTCCAACTGCTTACCAGCAAATATCAGCCGTTGTTGATCTGGAGGG 8724 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || || || ||| ||| |||| |||| ||| | | || ||||| | || || Sbjct 8725 ATGCCTTCTTTATCC-TGAATTTTAGCTTTCACGTTTTCGATGGTATCGCTAGCTTCAAC 8783 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || ||||| || |||| |||||| |||||||||||||| Sbjct 8784 TTCGAGAGTAATGGTTTTGCCAGTCAACGTCTTCACGAAAATCTGCAT 8831 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || | ||| | |||||| |||||||| ||| || || |||||||| ||||| Sbjct 9060 GCCACCTCGCAAACGGAGCACCAGGTGCAGCGTAGACTCTTTTTGGATGTTATAATCGGA 9119 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | ||||| | || |||||||||||||| || || ||||| || || || |||| || Sbjct 9120 CAATGTGCGACCATCCTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGCTGATCCGGTGG 9179 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | ||||| || |||||| |||| ||| | | || || || | |||| Sbjct 9180 GATACCTTCCTTATCTTGGATTTTAGCCTTC-ACGTTTTCAATCGTATCACTTGCTTCCA 9238 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | |||| ||||| |||||||| |||| ||| || || ||||| |||||| Sbjct 9239 CTTCCAGAGTTATTGTTTTACCTGTCAACGTTTTGACAAAAATTTGCATG 9288 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || || |||| ||| ||||| |||||||| || || || || || Sbjct 8833 CCACCGCGAAGTCGCAATACCAAATGAAGCGTAGATTCCTTCTGGATATTGTAATCAGAT 8892 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || | || || |||||||| || ||||| || || ||||| ||||| | ||| Sbjct 8893 AAAGTACGACCATCTTCAAGCTGCTTTCCTGCGAAAATGAGTCGCTGCTGGTCTGGTGGA 8952 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||| ||| ||| || |||| ||| | | ||| || || | || || Sbjct 8953 ATGCCTTCCTTATCCTGGATCTTA-GCTTTTACGTTTTCGATAGTATCACTAGCTTCAAC 9011 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| ||| || || || || ||||| || || || |||||||||||| Sbjct 9012 CTCCAACGTAATAGTCTTTCCGGTCAGAGTTTTCACAAAAATCTGCATG 9060 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || || || ||||||| ||| |||||||||||||| ||||| || Sbjct 9288 GCCACCGCGAAGCCGCAAAACAAGATGCAATGTGGATTCCTTCTGAATGTTGTAGTCTGA 9347 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGG 41753 | ||||| | || || | ||||| || ||||| |||| ||||| || || |||| Sbjct 9348 CAACGTGCGACCATCCTCTAATTGCTTTCCAGCGAAAATCAAACGCTGCTGATCTGGCGG 9407 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCA 41813 || || ||||| || ||||| ||||| | | |||||||| | || | Sbjct 9408 GATTCCT-TCCTTATCTTGTATTTTCGCCTTCACATTCTCAATCGTGTCGCTGGCTTCAA 9466 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || || || || ||||| || ||||| || ||||||||||| Sbjct 9467 CCTCGAGGGTAATTGTCTTGCCCGTAAGAGTCTTCACAAAAATCTGCAT 9515 >seq13344 Length=17380 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || ||||| || || ||||||||| ||||| ||||| ||| Sbjct 11961 CCACCTCGCAGACGCAGAACGAGATGAAGTGTAGACTCCTTCTGTATGTTGTAGTCCGAG 12020 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| ||||||||||| || ||||| || || |||||||| || | ||| Sbjct 12021 AGCGTTCGACCGTCTTCGAGCTGCTTTCCAGCGAAAATTAGACGCTGTTGATCAGGAGGA 12080 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCAC 41814 | | || ||| | ||| ||||||||| || | | ||||| | || || Sbjct 12081 ATTC-CTTCTTTATCTTGAATTTTTGCTTTTACATTCTCGATGGTGTCCGAAGGTTCTAC 12139 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | ||| || || || || |||| ||||| ||||| || ||||| Sbjct 12140 CTCAAGCGTGATGGTCTTCCCAGTCAAGGTCTTAACGAAGATTTGCAT 12187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461806543559600