Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq2168 138 1e-27 seq3632 131 2e-25 >seq2168 Length=109785 Score = 138 bits (152), Expect = 1e-27 Identities = 512/800 (64%), Gaps = 42/800 (5%) Strand=Plus/Minus Query 16774 GTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTC 16833 ||| || || |||| | || | ||| || | |||||| | ||| || ||||| |||| Sbjct 3013 GTATCCAAGCTCGGACAACAAACGATCAGCAATAAATTCCACATACTGACACATCAATTT 2954 Query 16834 GCAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAAC 16893 |||||||| || || |||| || || | ||| || | || ||| ||||| | Sbjct 2953 ACAGTTCATGCCGATCAGACTGACGGGCAAAGCATCAGAGAAGAATTTGTGCTCCACTTG 2894 Query 16894 AACCGCTTCCTTAATAATA-CTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTT 16952 || || || || || ||| |||||| ||||||||| || || | | || | | | Sbjct 2893 TACAGCATCTTTCATGATAGCTAGCA-CTCGTTCCTTCGAGGGCTTCTTCTTTATGTACT 2835 Query 16953 TAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAG 17012 | ||| || || || || || ||||| |||||||| | | || || || ||| Sbjct 2834 TGTACAACATGCAGGCAAAGTCCGTATGTAGGCCCTCGTCCCGAGTTATTAGCTCATTAC 2775 Query 17013 AAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACC 17072 |||||| | || |||||| ||| || ||||| | ||| || || || || || || Sbjct 2774 TAAATGTTAGACCTGGCATCAGTCCCCGCTTCTTAAGCCAGAAGATTGCAGCAAAACTCC 2715 Query 17073 CAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGT 17132 | || ||||| | || ||||| | ||| | || | | || ||| || |||||| | Sbjct 2714 CGGAGAAGAAAACTCCTTCGACCGCAGCATAAGCCACAAGTCTTTCCGCAAACGTCGACT 2655 Query 17133 CTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTT 17192 ||| || ||||| ||| || |||| | ||||| | | | || |||| | Sbjct 2654 TGGTGTCACCGATCCAGTTCAGCGCCCATTGAGCTTTGCGTTCCACACATTCCAGATTGC 2595 Query 17193 CTATGGCCTTAAATA----ATTTCT---------------------------CTT--TTT 17219 || || ||||||| || || ||| ||| Sbjct 2594 GAATTGCATTAAATAGAAAATCCCTACACGAAAAACGACAGACAATAGGCTACTTACTTT 2535 Query 17220 CCTGTAGG-TCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTC 17278 || | || || | ||||| ||||| ||||| || | ||||||||| ||||||||||| Sbjct 2534 TCTTTCGGATCTTTGATATATGTATCTATGAGAAGACAGTACATTTCCGAGTGTATGTTT 2475 Query 17279 TCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAG 17338 || | || ||||||| || || || || || ||||| | || || ||||| | | Sbjct 2474 TCAAACGCGATCTGAATGCCATAGAAACAACGAGCTTCTGGGATCTGCACTTCTTGGCTG 2415 Query 17339 AATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCA--ATA 17396 ||||||||| || ||||| || ||||| || || || |||||||| || | | | Sbjct 2414 AATCGTTCCAACAGGTTTTCCAAAACTATGCCATCACTGGCAGCGAAAAATGCTAGCACA 2355 Query 17397 TATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGG 17456 |||| ||||| | ||| | | | || |||||| | |||||||| | Sbjct 2354 TATG--AGATGAAGTGCCGTTCCCCAACTTTGAGCCGTTCCCAGTCAGTGAAATCTTTCG 2297 Query 17457 ATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATT-CCAA 17515 | | ||| ||||||||||| |||||||| ||| || || || || || |||| ||| Sbjct 2296 AAAGATCGACTTCTTCGGGCGTCCAAAACGAAGCGACCGCTTTCTTGTA-GTATTGCCAT 2238 Query 17516 ATATCATTGTATTGTATGGG 17535 || || | || || ||||| Sbjct 2237 ATTTCGTCATACTGGATGGG 2218 >seq3632 Length=73641 Score = 131 bits (144), Expect = 2e-25 Identities = 495/776 (64%), Gaps = 42/776 (5%) Strand=Plus/Minus Query 16798 ATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTAC 16857 ||| || ||||| || | |||||| ||||| |||| |||||||| || || |||| || Sbjct 32339 ATCGGCAACAAACTCCACATATTGACACATCAATTTACAGTTCATGCCGATCAGACTGAC 32280 Query 16858 CGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATA-CTAG 16916 || | ||| || | || || | ||||||| ||| || || || || || |||| Sbjct 32279 GGGCAAAGCATCAGAGAAGAACTGATGCTCTACTTGAACAGCATCTTTCATGATTGCTAG 32220 Query 16917 CAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGC 16976 || ||||||||| || || | | || | | || ||| || || || || || Sbjct 32219 CA-CTCGTTCCTTCGAGGGCTTCTTCTTTATGTACTTGTACAACATGCAAGCAAAGTCCG 32161 Query 16977 AATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTC 17036 ||||| || ||||| | || || || || ||| |||||| | || |||||| || Sbjct 32160 TATGTAGACCTTCGTCGCGACTTATTAGCTCATTACTAAATGTTAGACCTGGCATCAGTC 32101 Query 17037 CTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGG 17096 | || ||||| | ||| || || || || || ||| || ||||| | || ||||| | Sbjct 32100 CCCGCTTCTTAAGCCAGAAGATTGCAGCAAAACTCCCGGAGAAGAAAACTCCTTCGACTG 32041 Query 17097 ATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCA 17156 ||| | || | | || ||| || |||||| | ||| || ||||| ||| || Sbjct 32040 CAGCATAAGCCACAAGTCTTTCCGCAAACGTCGACTTGGTGTCACCGATCCAGTTCAGCG 31981 Query 17157 CCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATA--------- 17207 |||| | ||||| | | | || |||| | | || ||||||| Sbjct 31980 CCCATTGAGCTTTGCGTTCCACACATTCCAGATTGCGGACTGCATTAAATAGAAAATCCC 31921 Query 17208 ----------------AT--------TTCTCTTTTTCCTGTAGG-TCGATTATATACGTA 17242 || | ||| ||| || | || || | ||||| ||| Sbjct 31920 TGTACAATAAACGACAATCAACCAGATGCTCACTTTTCTTTTGGATCTTTGATATATGTA 31861 Query 17243 TCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAA 17302 || || || || ||||||||||||||||| |||||||| || ||||||| || || Sbjct 31860 TCTATAAGCAGAGAGTACATTTCGGAGTGTACATTCTCCATTGCAATCTGAATGCCATAG 31801 Query 17303 AAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTC 17362 || || || ||||| || || || ||||| | |||||||||| || ||||| Sbjct 31800 AAACAACGAGCTTCTGCGATCTGTACTTCTTGGCTGAATCGTTCCAACAGGTTTTCCAAA 31741 Query 17363 ACGATGCCGTCGCTCGCGGCGAAAAACGCCA--ATATATGCTTAATGAAATATTTTTCGT 17420 || ||||| || || || |||||||| || | | ||||| ||||| | ||| Sbjct 31740 ACTATGCCATCACTGGCAGCGAAAAATGCTAGCACATATG--AGATGAAGTGCCGTTCCC 31683 Query 17421 CCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCC 17480 | | | || |||||| | |||||||| || | ||| |||||||| |||| Sbjct 31682 CAACTTTGAGCCGTTCCCAGTCAGTGAAATCTTTCGAAAGATCGACTTCTTCAACCGTCC 31623 Query 17481 AAAAACTAGCCACTGCCTTTTTATACATATT-CCAAATATCATTGTATTGTATGGG 17535 |||| ||| || || || || || |||| ||| || || | || || ||||| Sbjct 31622 AAAACGAAGCGACCGCTTTCTTGTA-GTATTGCCATATTTCGTCATACTGGATGGG 31568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517415191447440