Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq3632 140 3e-28 seq2168 122 9e-23 >seq3632 Length=73641 Score = 140 bits (154), Expect = 3e-28 Identities = 496/776 (64%), Gaps = 42/776 (5%) Strand=Plus/Minus Query 16036 ATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTAC 16095 ||| || ||||| || | |||||||||||| || | || || || || || || | || Sbjct 32339 ATCGGCAACAAACTCCACATATTGACACATCAATTTACAGTTCATGCCGATCAGACTGAC 32280 Query 16096 CGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGT 16155 || | ||| | | || || || || |||| ||| || ||||| ||||| | Sbjct 32279 GGGCAAAGCATCAGAGAAGAACTGATGCTCTACTTGAACAGCATCTTTCATGATTGCTAG 32220 Query 16156 GGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCA 16215 ||||| | || || | | |||| || || ||| | || || ||||| Sbjct 32219 CACTCGTTCCTTCGAGGGCTTCTTCTTTATGTACTTGTACAACATGCAAGCAAAGTCCGT 32160 Query 16216 ATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCC 16275 |||||| |||||||| | || || || || || ||| |||| |||||||| ||| Sbjct 32159 ATGTAGACCTTCGTCGCGACTTATTAGCTCATTACTAAATGTTAGACCTGGCATCAGTCC 32100 Query 16276 TCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGA 16335 || ||||| | |||||| || |||||||| ||| || ||||| | || || || | Sbjct 32099 CCGCTTCTTAAGCCAGAAGATTGCAGCAAAACTCCCGGAGAAGAAAACTCCTTCGACTGC 32040 Query 16336 TGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTAC 16395 ||| |||| | | || |||||| |||| | | | | || ||||| ||| | | Sbjct 32039 AGCATAAGCCACAAGTCTTTCCGCAAACGTCGACTTGGTGTCACCGATCCAGTTCAGCGC 31980 Query 16396 CCATTCGGCTTTTTGTTTTATACAATCCA----------TCGTTTCTATGG------CCT 16439 ||||| ||||| ||| | ||| |||| | || || | ||| Sbjct 31979 CCATTGAGCTTTGCGTTCCACACATTCCAGATTGCGGACTGCATTAAATAGAAAATCCCT 31920 Query 16440 ------TAA---ACAAT--------TTCTC-TTTTTCCTGAATATCGATTATATACGTAT 16481 ||| ||||| | ||| ||||| | ||| | ||||| |||| Sbjct 31919 GTACAATAAACGACAATCAACCAGATGCTCACTTTTCTTTTGGATCTTTGATATATGTAT 31860 Query 16482 CAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGA 16541 | || || | | ||||||||| ||||||| ||||| || || ||||||| ||||||| Sbjct 31859 CTATAAGCAGAGAGTACATTTCGGAGTGTACATTCTCCATTGCAATCTGAATGCCATAGA 31800 Query 16542 AGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCA 16601 | || ||||| || || || |||||||| | ||||||||| |||||| || | Sbjct 31799 AACAACGAGCTTCTGCGATCTGTACTTCTTGGCTGAATCGTTCCAACAGGTTTTCCAAAA 31740 Query 16602 CGATACCGTCACTTGCAGCAAAAAACGCCA----ATATGTGCTTAATGAAATATTTTTCG 16657 | || || ||||| ||||| ||||| || | ||||| | ||||| | ||| Sbjct 31739 CTATGCCATCACTGGCAGCGAAAAATGCTAGCACATATGAG----ATGAAGTGCCGTTCC 31684 Query 16658 TCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTC 16717 || | | || | ||| || | |||||||| || | ||| |||||||| |||| Sbjct 31683 CCAACTTTGAGCCGTTCCCAGTCAGTGAAATCTTTCGAAAGATCGACTTCTTCAACCGTC 31624 Query 16718 CAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGG 16773 ||||| ||| || || || || || || ||| || || | || || ||||| Sbjct 31623 CAAAACGAAGCGACCGCTTTCTTGTAGTATTGCCATATTTCGTCATACTGGATGGG 31568 >seq2168 Length=109785 Score = 122 bits (134), Expect = 9e-23 Identities = 211/306 (69%), Gaps = 8/306 (3%) Strand=Plus/Minus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 ||||| ||||| || || | || ||||||||| ||||||||||| || | || |||||| Sbjct 2519 ATATATGTATCTATGAGAAGACAGTACATTTCCGAGTGTATGTTTTCAAACGCGATCTGA 2460 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGG 16591 | |||||||| || ||||| || | || || ||||| | ||||||||| |||| Sbjct 2459 ATGCCATAGAAACAACGAGCTTCTGGGATCTGCACTTCTTGGCTGAATCGTTCCAACAGG 2400 Query 16592 TTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCA----ATATGTGCTTAATGAA 16647 || || || || || ||||| ||||| ||||| || | ||||| | ||||| Sbjct 2399 TTTTCCAAAACTATGCCATCACTGGCAGCGAAAAATGCTAGCACATATGAG----ATGAA 2344 Query 16648 ATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTC 16707 | ||| || | | || | ||| || | |||||||| || | ||| ||||| Sbjct 2343 GTGCCGTTCCCCAACTTTGAGCCGTTCCCAGTCAGTGAAATCTTTCGAAAGATCGACTTC 2284 Query 16708 TTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTG 16767 ||| ||||||||||| ||| || || || || || || ||| || || | || || Sbjct 2283 TTCGGGCGTCCAAAACGAAGCGACCGCTTTCTTGTAGTATTGCCATATTTCGTCATACTG 2224 Query 16768 TATGGG 16773 ||||| Sbjct 2223 GATGGG 2218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511285536356560