Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2168 123 3e-23 seq3632 120 4e-22 seq584 114 2e-20 >seq2168 Length=109785 Score = 123 bits (136), Expect = 3e-23 Identities = 397/618 (64%), Gaps = 41/618 (7%) Strand=Plus/Minus Query 24150 TGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCA 24209 ||||| |||||||| | | | |||| || || ||| || || || ||||| || || Sbjct 2808 TGTAGGCCCTCGTCCCGAGTTATTAGCTCATTACTAAATGTTAGACCTGGCATCAGTCCC 2749 Query 24210 CGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCC 24269 ||||| |||||||| || || | ||||| || || ||||||| |||||| || || Sbjct 2748 CGCTTCTTAAGCCAGAAGATTGCAGCAAAACTCCCGGAGAAGAAAACTCCTTCGACCGCA 2689 Query 24270 GCAAAGGCAATAAGTCTTTCTCCATAAC--CGGC--GCTGTCATGTATCCACTTTTGAGC 24325 ||| | || | ||||||||| || ||| || | | ||||| ||||| || | || Sbjct 2688 GCATAAGCCACAAGTCTTTCCGCA-AACGTCGACTTGGTGTCACCGATCCAGTTCAGCGC 2630 Query 24326 CCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGt---- 24381 ||| | || || || ||||| || | || |||||||| ||| | | Sbjct 2629 CCATTGAGCTTTGCGTTCCACACATTCCAGATTGCGAATTGCATTAAATAGAAAATCCCT 2570 Query 24382 ----------------------------tt--ttttCATTACTATCTTTAACATATGTAT 24411 || ||||| || |||||| | |||||||| Sbjct 2569 ACACGAAAAACGACAGACAATAGGCTACTTACTTTTCTTTCGGATCTTTGATATATGTAT 2510 Query 24412 CAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGA 24471 | || | ||||| ||||||||||| || |||||||||| || || |||| || |||| Sbjct 2509 CTATGAGAAGACAGTACATTTCCGAGTGTATGTTTTCAAACGCGATCTGAATGCCATAGA 2450 Query 24472 AACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCA 24531 |||| | ||| || | ||||| |||||| | |||||||| | ||||| | Sbjct 2449 AACAACGAGCTTCTGGGATCTGCACTTCTTGGCTGAATCGTTCCAACAGGTTTTCCAAAA 2390 Query 24532 CTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTG 24591 |||| || |||||||| || ||||| || | |||| | || || | ||| | Sbjct 2389 CTATGCCATCACTGGCAGCGAAAAATGCTAGCACATATGAGATGAAGTGCCGTTCCCCAA 2330 Query 24592 GTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAA 24651 | | || | ||| ||| ||| |||||| || | ||| |||||||| ||||||| Sbjct 2329 CTTTGAGCCGTTCCCAGTCAGTGAAATCTTTCGAAAGATCGACTTCTTCGGGCGTCCAAA 2270 Query 24652 ATGATGCCTCTGCCTTTTTATACATATT-CCAGATGTCATGATATTGAATTGGAAAAATA 24710 | || || | || || || || |||| ||| || || | ||| || || || | || Sbjct 2269 ACGAAGCGACCGCTTTCTTGTA-GTATTGCCATATTTCGTCATACTGGATGGGTAGGATT 2211 Query 24711 ACAAATCTATTTGGATTT 24728 ||||| | | | || ||| Sbjct 2210 ACAAACCGAGTAGGGTTT 2193 >seq3632 Length=73641 Score = 120 bits (132), Expect = 4e-22 Identities = 399/618 (65%), Gaps = 41/618 (7%) Strand=Plus/Minus Query 24150 TGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCA 24209 |||||||| ||||| | ||| |||| || || ||| || || || ||||| || || Sbjct 32158 TGTAGACCTTCGTCGCGACTTATTAGCTCATTACTAAATGTTAGACCTGGCATCAGTCCC 32099 Query 24210 CGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCC 24269 ||||| |||||||| || || | ||||| || || ||||||| |||||| ||||| Sbjct 32098 CGCTTCTTAAGCCAGAAGATTGCAGCAAAACTCCCGGAGAAGAAAACTCCTTCGACTGCA 32039 Query 24270 GCAAAGGCAATAAGTCTTTCTCCATAAC--CGGC--GCTGTCATGTATCCACTTTTGAGC 24325 ||| | || | ||||||||| || ||| || | | ||||| ||||| || | || Sbjct 32038 GCATAAGCCACAAGTCTTTCCGCA-AACGTCGACTTGGTGTCACCGATCCAGTTCAGCGC 31980 Query 24326 CCAATCGGCCTTCTTTTTTACACA----AG----------GCATTG---------TCTCT 24362 ||| | || || || ||||| || ||||| || || Sbjct 31979 CCATTGAGCTTTGCGTTCCACACATTCCAGATTGCGGACTGCATTAAATAGAAAATCCCT 31920 Query 24363 ATAGCATTAAAGAGAT------AGttt-----ttttCATTACTATCTTTAACATATGTAT 24411 || || || || | || | ||||| || |||||| | |||||||| Sbjct 31919 GTACAATAAACGACAATCAACCAGATGCTCACTTTTCTTTTGGATCTTTGATATATGTAT 31860 Query 24412 CAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGA 24471 | || | ||| |||||||| || || | || || || || || |||| || |||| Sbjct 31859 CTATAAGCAGAGAGTACATTTCGGAGTGTACATTCTCCATTGCAATCTGAATGCCATAGA 31800 Query 24472 AACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCA 24531 |||| | ||| || | |||||||||||| | |||||||| | ||||| | Sbjct 31799 AACAACGAGCTTCTGCGATCTGTACTTCTTGGCTGAATCGTTCCAACAGGTTTTCCAAAA 31740 Query 24532 CTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTG 24591 |||| || |||||||| || ||||| || | |||| | || || | ||| | Sbjct 31739 CTATGCCATCACTGGCAGCGAAAAATGCTAGCACATATGAGATGAAGTGCCGTTCCCCAA 31680 Query 24592 GTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAA 24651 | | || | ||| ||| ||| |||||| || | ||| |||||||| || ||||||| Sbjct 31679 CTTTGAGCCGTTCCCAGTCAGTGAAATCTTTCGAAAGATCGACTTCTTCAACCGTCCAAA 31620 Query 24652 ATGATGCCTCTGCCTTTTTATACATATT-CCAGATGTCATGATATTGAATTGGAAAAATA 24710 | || || | || || || || |||| ||| || || | ||| || || || | || Sbjct 31619 ACGAAGCGACCGCTTTCTTGTA-GTATTGCCATATTTCGTCATACTGGATGGGTAGGATT 31561 Query 24711 ACAAATCTATTTGGATTT 24728 ||||| | | | || ||| Sbjct 31560 ACAAACCGAGTAGGGTTT 31543 >seq584 Length=457511 Score = 114 bits (126), Expect = 2e-20 Identities = 181/253 (72%), Gaps = 10/253 (4%) Strand=Plus/Minus Query 54314 CCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATA 54373 || ||||| | || ||||| | ||| ||| |||||| |||||| |||||||| || || Sbjct 419676 CCACCTGCATTCTTTGAGATAACTGCACATTGTTTTAGCGTATCGTAGATGCCTTCGATG 419617 Query 54374 CTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACA--TTTGGTGACGACTAGTTCCC 54430 ||||| | |||| ||||| |||| ||||| |||| | ||| || | || || Sbjct 419616 CTATCGCTCTTCATCGTTAACAAGAAG-CAGCTGGACAACTGTGGCTTCGGC--GTCCCA 419560 Query 54431 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 54490 ||||| || || || || || ||||| || ||||| || | ||| | | || || ||| Sbjct 419559 GCATTGAACAACGTCGGTGAGGCGTGAGTGAACCACTTCTGAGACATCAAATCATATGTC 419500 Query 54491 TCGATAGCTGAGTCTATATCC--CATTGATGAATTCCTACTGCGACACGCATTAACATGT 54548 || |||||| || ||||| ||| |||||||||||| | || ||||| | ||| | Sbjct 419499 TCAATAGCTCCTTCAATATCATTCAT--ATGAATTCCTACGGACACTCGCATCAGCATAT 419442 Query 54549 GCTGAGGTCTTTC 54561 | |||||||| || Sbjct 419441 GTTGAGGTCTCTC 419429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593571996999840