Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq6840 113 5e-20 seq2168 104 2e-17 seq6576 98.7 1e-15 seq2814 87.8 2e-12 >seq6840 Length=28952 Score = 113 bits (124), Expect = 5e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || ||||| || |||||||| ||||| |||| || || ||| Sbjct 19829 ATGCAAATTTTCGTGAAGACGCTTACCGGCAAAACGATCACTCTCGAGGTAGAGTCCAGT 19770 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | || |||| | || | ||||||| |||||||| || || || | ||||| Sbjct 19769 GATACGATTGAGAACG-TGAAAGCCAAAATTCAAGACAAAGAAGGTATTCCTCCAGACCA 19711 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || || | || ||||| ||| |||| || | || || | |||||||| Sbjct 19710 GCAACGTCTAATTTTTGCTGGCAAGCAGTTGGAAGATGGCCGTACTTTATCTGACTACAA 19651 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTT 40907 ||||||||| ||| | || | ||| |||| ||||| || Sbjct 19650 CATCCAGAAAGAGTCAACCTTACATTTAGTTTTGCGTTT 19612 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| || || |||||||| ||||| |||| || || ||| Sbjct 20057 ATGCAGATCTTCGTGAAAACACTTACCGGCAAAACGATCACTCTCGAGGTAGAGTCCAGT 19998 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | || |||| | || | ||||||| |||||||| || || || | ||||| Sbjct 19997 GATACGATTGAGAACG-TGAAAGCCAAAATTCAAGACAAAGAAGGTATTCCTCCAGACCA 19939 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || || | || ||||| ||| |||| || | || || | |||||||| Sbjct 19938 GCAACGTCTAATTTTTGCTGGCAAGCAGTTGGAAGATGGCCGTACTTTATCTGACTACAA 19879 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||| ||| | || || || Sbjct 19878 CATCCAGAAAGAGTCGACTCTACA 19855 >seq2168 Length=109785 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 116993 TGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTC 117052 ||||||||| |||||||| | || || | | || | || | || ||||| | Sbjct 2627 TGGGCGCTGAACTGGATCGGTGACACCAAGTCGACGTTTGCGGAAAGACTTGTGGCTTAT 2686 Query 117053 GCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAA 117112 || || ||||| || || ||||| || || ||||| || || || || ||||| ||||| Sbjct 2687 GCTGCGGTCGAAGGAGTTTTCTTCTCCGGGAGTTTTGCTGCAATCTTCTGGCTTAAGAAG 2746 Query 117113 CGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTG 117172 || || || ||||| || || || || || || ||||| || | |||||||||| || Sbjct 2747 CGGGGACTGATGCCAGGTCTAACATTTAGTAATGAGCTAATAACTCGGGACGAGGGCCTA 2806 Query 117173 CATTGCGACTTTGCCTGTTTGCTGTTCAAG 117202 ||| ||||||||||| || ||| |||| Sbjct 2807 CATACGGACTTTGCCTGCATGTTGTACAAG 2836 Score = 96.9 bits (106), Expect = 4e-15 Identities = 170/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 116648 TACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACG 116707 ||||| || || | || ||||| ||||| ||| || || || || || || || Sbjct 2248 TACAAGAAAGCGGTCGCTTCGTTTTGGACGCCCGAAGAAGTCGATCTTTCGAAAGATTTC 2307 Query 116708 AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTT 116767 | |||||||| || | || | || || || |||||| | ||||| || ||| Sbjct 2308 ACTGACTGGGAACGGCTCAAAGTTGGGGAACGGCACTTCATCTCATATGTGCTAGCATTT 2367 Query 116768 TTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTG 116827 ||||| ||||| || ||||| || || || ||| | || || ||| || || ||| Sbjct 2368 TTCGCTGCCAGTGATGGCATAGTTTTGGAAAACCTGTTGGAACGATTCAGCCAAGAAGTG 2427 Query 116828 CAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCG 116887 ||| | | || || || || ||||| ||| |||||||||| | || ||| | |||||| Sbjct 2428 CAGATCCCAGAAGCTCGTTGTTTCTATGGCATTCAGATCGCGTTTGAAAACATACACTCG 2487 Query 116888 GAAATGTA 116895 |||||||| Sbjct 2488 GAAATGTA 2495 >seq6576 Length=99650 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||| | || || ||||||||||| | || || ||||||| | Sbjct 35702 ATGCAGATTTTCGTGAAGACGTTGACTGGGAAAACCATCACTCTTGAAGTAGAAGCCAGC 35643 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | || || | | || | || |||| ||||| || ||||| || | ||||| Sbjct 35642 GATACGATTGAGAATG-TGAAAGCGAAGATTCAAGACAAGGAAGGCATTCCACCAGACCA 35584 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| | || | ||||| || ||| |||| || | || || | || ||||| Sbjct 35583 ACAACGATTGATATTTGCGGGGAAGCAGTTGGAAGATGGTCGTACGTTGTCTGATTACAA 35524 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| | || ||||||| || ||||| Sbjct 35523 TATCCAGAAGGAGTCAACTTTGCATCTTGTTTTGCG 35488 >seq2814 Length=333951 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| ||||| || || || | || || || |||||||| | || || |||||| Sbjct 220767 AAGATGCAGATATTTGTGAAGACTTTGACTGGGAAGACCATCACTCTTGAAGTAGAAGCC 220826 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | ||| | | | | | || | || |||| ||||| || ||||| || | ||| Sbjct 220827 AGCGATACGATCGAGAATGTGAAAGCGAAGATTCAAGACAAGGAAGGCATTCCACCAGAC 220886 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || |||||| | || | ||||| || ||| |||| || | || || | || ||| Sbjct 220887 CAACAACGATTGATATTTGCGGGGAAGCAGTTGGAAGATGGTCGTACGTTGTCTGATTAC 220946 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || |||||||||||| | || ||||||| || ||||| Sbjct 220947 AATATCCAGAAGGAGTCAACTTTGCATCTTGTTTTGCG 220984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515089377642080