Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq6840 141 1e-28 seq6576 122 1e-22 seq2814 122 1e-22 seq1875 87.8 3e-12 >seq6840 Length=28952 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| || || |||||||| || ||| | ||| | || | | | Sbjct 19829 ATGCAAATTTTCGTGAAGACGCTTACCGGCAAAACGATCACTCTCGAGGTAGAGTCCAGT 19770 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| || | ||| ||||||||||| ||||||||||| || || || || Sbjct 19769 GATACGATTGAGAACGTGAAAGCCAAAATTCAAGACAAAGAAGGTATTCCTCCAGACCAG 19710 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | || |||||||| || || || || || ||| | || || ||| || || || Sbjct 19709 CAACGTCTAATTTTTGCTGGCAAGCAGTTGGAAGATGGCCGTACTTTATCTGACTACAAC 19650 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 || || ||||| ||||| || ||||| ||||| |||||||| |||||| Sbjct 19649 ATCCAGAAAGAGTCAACCTTACATTTAGTTTTGCGTTTACGCGGTGGT 19602 Score = 127 bits (140), Expect = 3e-24 Identities = 171/238 (72%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | || ||||| || |||||||| || ||| | ||| | || | | | Sbjct 20057 ATGCAGATCTTCGTGAAAACACTTACCGGCAAAACGATCACTCTCGAGGTAGAGTCCAGT 19998 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| || | ||| ||||||||||| ||||||||||| || || || || Sbjct 19997 GATACGATTGAGAACGTGAAAGCCAAAATTCAAGACAAAGAAGGTATTCCTCCAGACCAG 19938 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | || |||||||| || || || || || ||| | || || ||| || || || Sbjct 19937 CAACGTCTAATTTTTGCTGGCAAGCAGTTGGAAGATGGCCGTACTTTATCTGACTACAAC 19878 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || || ||||| || ||| | || |||||| | ||| |||| |||||||| ||| || Sbjct 19877 ATCCAGAAAGAGTCGACTCTACACTTGGTTCTTCGTCTACGTGGTGGTATGCAAATTT 19820 >seq6576 Length=99650 Score = 122 bits (134), Expect = 1e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| | || || ||||| || ||| | || | ||||| | Sbjct 35702 ATGCAGATTTTCGTGAAGACGTTGACTGGGAAAACCATCACTCTTGAAGTAGAAGCCAGC 35643 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | ||| ||| |||||||| || ||||| || ||||| || ||| Sbjct 35642 GATACGATTGAGAATGTGAAAGCGAAGATTCAAGACAAGGAAGGCATTCCACCAGACCAA 35583 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || ||||| || || || || || ||| |||| || || ||||| ||| Sbjct 35582 CAACGATTGATATTTGCGGGGAAGCAGTTGGAAGATGGTCGTACGTTGTCTGATTACAAT 35523 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || |||||||||||| | ||||| || | || |||||||| Sbjct 35522 ATCCAGAAGGAGTCAACTTTGCATCTTGTTTTGCGACTTCGTGGTGGTAT 35473 >seq2814 Length=333951 Score = 122 bits (134), Expect = 1e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| |||||| | ||||| | || || || || || ||| | || | ||||| | Sbjct 220770 ATGCAGATATTTGTGAAGACTTTGACTGGGAAGACCATCACTCTTGAAGTAGAAGCCAGC 220829 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| | ||| ||| |||||||| || ||||| || ||||| || ||| Sbjct 220830 GATACGATCGAGAATGTGAAAGCGAAGATTCAAGACAAGGAAGGCATTCCACCAGACCAA 220889 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || ||||| || || || || || ||| |||| || || ||||| ||| Sbjct 220890 CAACGATTGATATTTGCGGGGAAGCAGTTGGAAGATGGTCGTACGTTGTCTGATTACAAT 220949 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || |||||||||||| | ||||| || | || |||||||| Sbjct 220950 ATCCAGAAGGAGTCAACTTTGCATCTTGTTTTGCGACTTCGTGGTGGTAT 220999 Score = 122 bits (134), Expect = 1e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| |||||| | ||||| | || || || || ||||| | || | || || | | Sbjct 221147 ATGCAGATATTTGTGAAGACGTTGACTGGTAAGACGATAACATTGGAAGTGGAGGCTAGT 221206 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | ||| ||| |||||||| || || || || ||||| || ||| Sbjct 221207 GATACGATTGAGAATGTGAAAGCGAAGATTCAAGACAAGGAGGGCATTCCACCAGACCAA 221266 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || ||||| || || || || || ||| |||| || || ||||| ||| Sbjct 221267 CAACGATTGATATTTGCGGGGAAGCAGTTGGAAGATGGTCGTACGTTGTCTGATTACAAT 221326 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || |||||||||||| | ||||| || | || |||||||| Sbjct 221327 ATCCAGAAGGAGTCAACTTTGCATCTTGTTTTGCGACTTCGTGGTGGTAT 221376 Score = 122 bits (134), Expect = 1e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| |||||| | ||||| | || || || || ||||| | || | || || | | Sbjct 221375 ATGCAGATATTTGTGAAGACGTTGACTGGTAAGACGATAACATTGGAAGTGGAGGCTAGT 221434 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | ||| ||| |||||||| || || || || ||||| || ||| Sbjct 221435 GATACGATTGAGAATGTGAAAGCGAAGATTCAAGACAAGGAGGGCATTCCACCAGACCAA 221494 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | || ||||| || || || || || ||| |||| || || ||||| ||| Sbjct 221495 CAACGATTGATATTTGCGGGGAAGCAGTTGGAAGATGGTCGTACGTTGTCTGATTACAAT 221554 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || |||||||||||| | ||||| || | || |||||||| Sbjct 221555 ATCCAGAAGGAGTCAACTTTGCATCTTGTTTTGCGACTTCGTGGTGGTAT 221604 >seq1875 Length=193106 Score = 87.8 bits (96), Expect = 3e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 || ||||| |||||| | ||||| | || ||||| || || || ||||| | ||| | Sbjct 184070 ACGATGCAGATATTTGTGAAGACTTTGACGGGCAAGACCATCACCCTAGAGGTGGAATCT 184011 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 ||||| || ||| | || || || || ||||||||||| || || || || Sbjct 184010 TCGGATACGATCGAGAATGTGAAGGCTAAGATACAGGATAAAGAAGGAATTCCTCCCGAC 183951 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 || || | | ||||| || || || || || |||||| | |||| | ||||| Sbjct 183950 CAGCAGCGATTGATTTTCGCCGGGAAGCAGTTGGAGGATGGGAGAACTCTTTCGGATTAC 183891 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| || ||||| ||| | ||| ||||| | || | || ||||| || Sbjct 183890 AATATTCAGAAGGAATCGACTCTCCATCTGGTTCTGCGCCTGCGCGGTGGAAT 183838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755265643974400