Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq6576 104 3e-17 seq6457 100 3e-16 seq2814 100 3e-16 seq1263 100 3e-16 seq1875 93.3 5e-14 seq3048 82.4 9e-11 >seq6576 Length=99650 Score = 104 bits (114), Expect = 3e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 ||||| || | |||||| || |||||| || ||||||||||||| || || || | Sbjct 35488 CGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGACAACGTACGACCA 35547 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || | |||||| || || ||||| | ||| || ||||| | || | || |||||| Sbjct 35548 TCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCCTTCCTTG 35607 Query 43089 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 | | ||| | || | ||| | || | | ||| ||||| | ||| || || | ||||| Sbjct 35608 T-CTTGAATCTTCGCTTTCACATTCTCAATCGTATCGCTGGCTTCTACTTCAAGAGTGAT 35666 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||| || || | |||||| || || || ||||| Sbjct 35667 GGTTTTCCCAGTCAACGTCTTCACGAAAATCTGCAT 35702 >seq6457 Length=42432 Score = 100 bits (110), Expect = 3e-16 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 ||||| |||| |||| ||||||||||||| || || || ||||||||||||| ||||| Sbjct 5336 AAAATGCGCTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACT 5277 Query 60118 CACCACTATACTACCGAGGA 60137 |||||||||||||||||||| Sbjct 5276 CACCACTATACTACCGAGGA 5257 >seq2814 Length=333951 Score = 100 bits (110), Expect = 3e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 ||||| || | |||||| || |||||| || ||||||||||||| || || || | Sbjct 220984 CGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGACAACGTACGACCA 220925 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || | |||||| || || ||||| | ||| || ||||| | || | || |||||| Sbjct 220924 TCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCCTTCCTTG 220865 Query 43089 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 | | ||| | || | ||| | || | | ||| ||||| | ||| || || | ||||| Sbjct 220864 T-CTTGAATCTTCGCTTTCACATTCTCGATCGTATCGCTGGCTTCTACTTCAAGAGTGAT 220806 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 ||| || || || | ||||| ||||| || ||||| || Sbjct 220805 GGTCTTCCCAGTCAAAGTCTTCACAAATATCTGCATCTT 220767 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 ||||| || | |||||| || |||||| || ||||||||||||| || || || | Sbjct 221361 CGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGACAACGTACGACCA 221302 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || | |||||| || || ||||| | ||| || ||||| | || | || ||||||| Sbjct 221301 TCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTG 221242 Query 43089 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 | | ||| | || | ||| | || | | ||| || || | ||||| || | || || Sbjct 221241 T-CTTGAATCTTCGCTTTCACATTCTCAATCGTATCACTAGCCTCCACTTCCAATGTTAT 221183 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || || | |||||| ||||| || ||||| Sbjct 221182 CGTCTTACCAGTCAACGTCTTCACAAATATCTGCAT 221147 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 ||||| || | |||||| || |||||| || ||||||||||||| || || || | Sbjct 221589 CGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGACAACGTACGACCA 221530 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || | |||||| || || ||||| | ||| || ||||| | || | || ||||||| Sbjct 221529 TCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTG 221470 Query 43089 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 | | ||| | || | ||| | || | | ||| || || | ||||| || | || || Sbjct 221469 T-CTTGAATCTTCGCTTTCACATTCTCAATCGTATCACTAGCCTCCACTTCCAATGTTAT 221411 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || || | |||||| ||||| || ||||| Sbjct 221410 CGTCTTACCAGTCAACGTCTTCACAAATATCTGCAT 221375 >seq1263 Length=231788 Score = 100 bits (110), Expect = 3e-16 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| | |||| |||| ||||||||||||| || || || ||||||||||||| ||||| Sbjct 109873 AAAAGTCGCTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACT 109932 Query 60118 CACCACTATACTACCGAGGA 60137 |||||||||||||||||||| Sbjct 109933 CACCACTATACTACCGAGGA 109952 >seq1875 Length=193106 Score = 93.3 bits (102), Expect = 5e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| |||||||||||||| | ||||| | | | || || | |||||| || ||||| Sbjct 183877 TCCTTCTGAATATTGTAATCCGAAAGAGTTCTCCCATCCTCCAACTGCTTCCCGGCGAAA 183936 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | |||||||||||||| || | | || || ||| || || || | || Sbjct 183937 ATCAATCGCTGCTGGTCGGGAGGAATTCCTTCTTTATCCTGTATCTTAGCCTTCACATTC 183996 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | ||| || |||||||| || | |||||||| |||||||| | ||||| ||| Sbjct 183997 TCGATCGTATCCGAAGATTCCACCTCTAGGGTGATGGTCTTGCCCGTCAAAGTCTTCACA 184056 Query 43173 AAGATTTGCAT 43183 || || ||||| Sbjct 184057 AATATCTGCAT 184067 >seq3048 Length=98892 Score = 82.4 bits (90), Expect = 9e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| || || |||||||||||||||| ||||||||||| | Sbjct 85453 CTCCCCGGCCGGGAATCGAACCCGGGCCTTCCGCGTGACAGGCGGAGATACTCACCACAA 85394 Query 60126 TAC 60128 ||| Sbjct 85393 TAC 85391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571673516260240