Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq1875 114 8e-21 seq6840 113 3e-20 seq2814 86.0 4e-12 seq6576 82.4 5e-11 >seq1875 Length=193106 Score = 114 bits (126), Expect = 8e-21 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 34159 GAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTC 34218 || ||| |||||||| | ||| ||||| || | ||| ||| ||||| || ||||| || Sbjct 183837 GATTCCACCGCGCAGGCGCAGAACCAGATGGAGAGTCGATTCCTTCTGAATATTGTAATC 183896 Query 34219 GGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGAC 34278 || || | | || ||||||||||| || |||||||| | |||||||||||| Sbjct 183897 CGAAAGAGTTCTCCCATCCTCCAACTGCTTCCCGGCGAAAATCAATCGCTGCTGGTCGGG 183956 Query 34279 GGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTC 34338 || | | || || || |||||| ||| | || | |||| ||| | ||||| Sbjct 183957 AGGAATTCCTTCTTTATCCTGTATCTTAGCCTTCACATTCTCGATCGTATCCGAAGATTC 184016 Query 34339 GACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCG 34391 || || | |||||||| ||||| || | ||| |||||||| |||||||||| Sbjct 184017 CACCTCTAGGGTGATGGTCTTGCCCGTCAAAGTCTTCACAAATATCTGCATCG 184069 >seq6840 Length=28952 Score = 113 bits (124), Expect = 3e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||||| ||| |||||||| ||||||||||| || | |||| | || Sbjct 19846 AGAACCAAGTGTAGAGTCGACTCTTTCTGGATGTTGTAGTCAGATAAAGTACGGCCATCT 19905 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||||||||||||| || ||||| || || |||||||| || | | || ||||| Sbjct 19906 TCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCT 19965 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 || ||| ||||| | | | |||| ||| | || || || || | ||||| || Sbjct 19966 TGAAT-TTTGGCTTTCACGTTCTCAATCGTATCACTGGACTCTACCTCGAGAGTGATCGT 20024 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||||||| || |||||||| |||||||||||| Sbjct 20025 TTTGCCGGTAAGTGTTTTCACGAAGATCTGCATC 20058 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| ||||||||||| || | |||| | || |||||||||||||| || ||| Sbjct 19639 TCTTTCTGGATGTTGTAGTCAGATAAAGTACGGCCATCTTCCAACTGCTTGCCAGCAAAA 19698 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317 || || || |||||||| || | | || ||||| || ||| ||||| | | Sbjct 19699 ATTAGACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCTTGAAT-TTTGGCTTTCACGTT 19757 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | |||| ||| | || || || || | ||||| ||||||||||| || || ||||| Sbjct 19758 CTCAATCGTATCACTGGACTCTACCTCGAGAGTGATCGTTTTGCCGGTAAGCGTCTTCAC 19817 Query 34378 AAAGATCTGCAT 34389 || || ||||| Sbjct 19818 GAAAATTTGCAT 19829 >seq2814 Length=333951 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | || || || || ||||| || ||||| || ||||| || ||| Sbjct 220996 CCACCACGAAGTCGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGAC 220937 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | | ||| | || ||||||||||| || || || || | || || ||||| || Sbjct 220936 AACGTACGACCATCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGA 220877 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||||| ||| || ||||| | || | |||| |||| | | ||| || Sbjct 220876 ATGCCTTCCTTGTCTTGAATC-TTCGCTTTCACATTCTCGATCGTATCGCTGGCTTCTAC 220818 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | |||||||| || || || | ||| |||||||| ||||||||| Sbjct 220817 TTCAAGAGTGATGGTCTTCCCAGTCAAAGTCTTCACAAATATCTGCATC 220769 >seq6576 Length=99650 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | || || || || ||||| || ||||| || ||||| || ||| Sbjct 35476 CCACCACGAAGTCGCAAAACAAGATGCAAAGTTGACTCCTTCTGGATATTGTAATCAGAC 35535 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | | ||| | || ||||||||||| || || || || | || || ||||| || Sbjct 35536 AACGTACGACCATCTTCCAACTGCTTCCCCGCAAATATCAATCGTTGTTGGTCTGGTGGA 35595 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||||| ||| || ||||| | || | |||| |||| | | ||| || Sbjct 35596 ATGCCTTCCTTGTCTTGAATC-TTCGCTTTCACATTCTCAATCGTATCGCTGGCTTCTAC 35654 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | ||||||||||| || || | || ||||| || ||||||||| Sbjct 35655 TTCAAGAGTGATGGTTTTCCCAGTCAACGTCTTCACGAAAATCTGCATC 35703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322992629084480