Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq3632 140 3e-28 >seq3632 Length=73641 Score = 140 bits (154), Expect = 3e-28 Identities = 389/604 (64%), Gaps = 42/604 (7%) Strand=Plus/Minus Query 16232 ATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTA 16291 || |||||||| || ||| | |||||||| | |||||||| ||| || |||||| Sbjct 32176 ATGCAAGCAAAGTCCGTATGTAGACCTTCGTCGCGACTTATTAGCTCATTACTAAATGTT 32117 Query 16292 AGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAG 16351 ||||||||||| ||||| || || |||| ||| || || || ||||| || || ||| Sbjct 32116 AGACCTGGCATCAGTCCCCGCTTCTTAAGCCAGAAGATTGCAGCAAAACTCCCGGAGAAG 32057 Query 16352 AATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAttt----tt 16407 || | ||||| ||||| ||| | || || | || || | |||| | | || | Sbjct 32056 AAAACTCCTTCGACTGCAGCATAAGCCACAAGTCTTTCCGCAAACGT-CGACTTGGTGTC 31998 Query 16408 actttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTAT 16467 || | ||||| || ||||| | ||||| ||| ||||| | || || | Sbjct 31997 AC---CGATCCAGTTCAGCGCCCATTGAGCTTTGCGTTCCACACATTCCAGATTGCGGAC 31941 Query 16468 TGCATTAAATAAATAAttt----------------------------------ttttCTT 16493 ||||||||||| | ||| ||||||| Sbjct 31940 TGCATTAAATAGAAAATCCCTGTACAATAAACGACAATCAACCAGATGCTCACTTTTCTT 31881 Query 16494 TGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCA 16553 | |||| ||||| |||||||| || | | |||||||| || || | |||||||| Sbjct 31880 TTGGATCTTTGATATATGTATCTATAAGCAGAGAGTACATTTCGGAGTGTACATTCTCCA 31821 Query 16554 TTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACC 16613 |||| ||||||| ||||| || || | |||||| | || |||||||| | || | Sbjct 31820 TTGCAATCTGAATGCCATAGAAACAACGAGCTTCTGCGATCTGTACTTCTTGGCTGAATC 31761 Query 16614 TTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTT 16673 ||| | |||||| |||||| ||||| || || || ||||| || || | | | Sbjct 31760 GTTCCAACAGGTTTTCCAAAACTATGCCATCACTGGCAGCGAAAAATGCTAGCACATATG 31701 Query 16674 TAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAAT 16733 || || | ||| | || || | |||||||| |||||||| || | || Sbjct 31700 AGATGAAGTGCCGTTCCCCAACTTTGAGCCGTTCCCAGTCAGTGAAATCTTTCGAAAGAT 31641 Query 16734 CGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTCTT 16793 |||| ||||| || |||||||| ||||| || || || || || || |||||| || | Sbjct 31640 CGACTTCTTCAACCGTCCAAAACGAAGCGACCGCTTTCTTGTAGTATTGCCATATTTCGT 31581 Query 16794 CGTA 16797 | || Sbjct 31580 CATA 31577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462395458538800