Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1875 87.8 1e-12 seq2814 86.0 5e-12 >seq1875 Length=193106 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 ||||||||||| ||||| || || | | || |||| || || |||||||| Sbjct 183877 TCCTTCTGAATATTGTAATCCGAAAGAGTTCTCCCATCCTCCAACTGCTTCCCGGCGAAA 183936 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 ||||| ||||| ||||||||||| | || || || ||| || || ||| || | Sbjct 183937 ATCAATCGCTGCTGGTCGGGAGGAATTCCTTCTTTATCCTGTATCTTAGCCTTCACATTC 183996 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | ||| | |||||||| | ||| || ||||||||||||| |||||||||| Sbjct 183997 TCGATCGTATCCGAAGATTCCACCTCTAGGGTGATGGTCTTGCCCGTCAAAGTCTTCACA 184056 Query 45326 AAGATTTGCAT 45336 || || ||||| Sbjct 184057 AATATCTGCAT 184067 >seq2814 Length=333951 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| || ||||| || || ||| | || |||| || || || || || Sbjct 221338 CTCCTTCTGGATATTGTAATCAGACAACGTACGACCATCTTCCAACTGCTTCCCCGCAAA 221279 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 |||||| || |||||||| || || | ||||||||||| ||| || || || Sbjct 221278 TATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTGTCTTGAATCTTCGCTTTCACATT 221219 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | || | | ||||||| |||| || |||||||| || |||| |||||||| Sbjct 221218 CTCAATCGTATCACTAGCCTCCACTTCCAATGTTATCGTCTTACCAGTCAACGTCTTCAC 221159 Query 45325 AAAGATTTGCAT 45336 ||| || ||||| Sbjct 221158 AAATATCTGCAT 221147 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| || ||||| || || ||| | || |||| || || || || || Sbjct 221566 CTCCTTCTGGATATTGTAATCAGACAACGTACGACCATCTTCCAACTGCTTCCCCGCAAA 221507 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 |||||| || |||||||| || || | ||||||||||| ||| || || || Sbjct 221506 TATCAATCGTTGTTGGTCTGGTGGAATGCCCTCCTTGTCTTGAATCTTCGCTTTCACATT 221447 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | || | | ||||||| |||| || |||||||| || |||| |||||||| Sbjct 221446 CTCAATCGTATCACTAGCCTCCACTTCCAATGTTATCGTCTTACCAGTCAACGTCTTCAC 221387 Query 45325 AAAGATTTGCAT 45336 ||| || ||||| Sbjct 221386 AAATATCTGCAT 221375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394978139653318