Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq2168 120 3e-22 >seq2168 Length=109785 Score = 120 bits (132), Expect = 3e-22 Identities = 380/597 (64%), Gaps = 34/597 (6%) Strand=Plus/Minus Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263 || ||||| || ||| |||||||| || | | | || || || || |||||||| Sbjct 2823 CAGGCAAAGTCCGTATGTAGGCCCTCGTCCCGAGTTATTAGCTCATTACTAAATGTTAGA 2764 Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 14323 |||||||||| ||| || || || | ||| || |||||||| || ||||| ||||| Sbjct 2763 CCTGGCATCAGTCCCCGCTTCTTAAGCCAGAAGATTGCAGCAAAACTCCCGGAGAAGAAA 2704 Query 14324 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT 14383 | ||| || || |||||| | || | | || ||| |||||| | || ||| Sbjct 2703 ACTCCTTCGACCGCAGCATAAGCCACAAGTCTTTCCGCAAACGTCGACTTGGTGTCACCG 2644 Query 14384 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTA 14443 ||||| || ||||||| || ||| || | | | |||| | ||| |||||| Sbjct 2643 ATCCAGTTCAGCGCCCATTGAGCTTTGCGTTCCACACATTCCAGATTGCGAATTGCATTA 2584 Query 14444 AATA----------------------------AATG------TTCCTTCTCTTTAGTACT 14469 |||| ||| || ||| ||||| | | Sbjct 2583 AATAGAAAATCCCTACACGAAAAACGACAGACAATAGGCTACTTACTTTTCTTTCGGATC 2524 Query 14470 TGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTAT 14529 | || |||||||| || || | | |||||||| |||||||||||||| | || || Sbjct 2523 TTTGATATATGTATCTATGAGAAGACAGTACATTTCCGAGTGTATGTTTTCAAACGCGAT 2464 Query 14530 CTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGC 14589 ||||| ||||| ||||| | |||||||| || || ||| | |||| ||| Sbjct 2463 CTGAATGCCATAGAAACAACGAGCTTCTGGGATCTGCACTTCTTGGCTGAATCGTTCCAA 2404 Query 14590 CAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAA 14649 || ||||| |||||| |||||||| || || |||||||| | | | | || || Sbjct 2403 CAGGTTTTCCAAAACTATGCCATCACTGGCAGCGAAAAATGCTAGCACATATGAGATGAA 2344 Query 14650 GTATTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTC 14709 || | || || |||| || ||| || | ||||| || |||||||| ||||| Sbjct 2343 GTGCCGTTCCCCAACTTTGAGCCGTTCCCAGTCAGTGAAATCTTTCGAAAGATCGACTTC 2284 Query 14710 ATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATACATTACCCATATTTCTTTATA 14766 || |||||||| ||| || ||||| || || | ||||||||| | ||| Sbjct 2283 TTCGGGCGTCCAAAACGAAGCGACCGCTTTCTTGTAGTATTGCCATATTTCGTCATA 2227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482224060967440