Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq6840 104 2e-17 >seq6840 Length=28952 Score = 104 bits (114), Expect = 2e-17 Identities = 166/237 (70%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||| || || || || || | |||||||||||||| || |||| || || || || Sbjct 19829 ATGCAAATTTTCGTGAAGACGCTTACCGGCAAAACGATCACTCTCGAGGTAGAGTCCAGT 19770 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | | || | || || | |||||| | |||||||| | || |||||| Sbjct 19769 GATACGATTGAGAACGTGAAAGCCAAAATTCAAGACAAAGAAGGTATTCCTCCAGACCAG 19710 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 |||||| |||| | ||| ||||| || |||||||| | ||| | || |||| | Sbjct 19709 CAACGTCTAATTTTTGCTGGCAAGCAGTTGGAAGATGGCCGTACTTTATCTGACTACAAC 19650 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGTCAATCAATT 25068 || ||||||||| | || | |||||||| || || || ||||| ||||||| |||| Sbjct 19649 ATCCAGAAAGAGTCAACCTTACATTTAGTTTTGCGTTTACGCGGTGGTCAAT-AATT 19594 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 24825 TAACATCATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGA 24884 |||| | |||||||| || || ||||| | |||||||||||||| || |||| || || Sbjct 20064 TAACGTGATGCAGATCTTCGTGAAAACACTTACCGGCAAAACGATCACTCTCGAGGTAGA 20005 Query 24885 ATCGAGCGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGT 24944 || || || | | || | || || | |||||| | |||||||| | || Sbjct 20004 GTCCAGTGATACGATTGAGAACGTGAAAGCCAAAATTCAAGACAAAGAAGGTATTCCTCC 19945 Query 24945 TGACCAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGA 25004 |||||||||||| |||| | ||| ||||| || |||||||| | ||| | || Sbjct 19944 AGACCAGCAACGTCTAATTTTTGCTGGCAAGCAGTTGGAAGATGGCCGTACTTTATCTGA 19885 Query 25005 TTACAGCATACAGAAAGAGGCCACGCTTCATTTAGT 25040 |||| ||| ||||||||| | || || || || || Sbjct 19884 CTACAACATCCAGAAAGAGTCGACTCTACACTTGGT 19849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418201232903360