Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq584 132 4e-26 seq1875 104 2e-17 seq6840 96.9 3e-15 >seq584 Length=457511 Score = 132 bits (146), Expect = 4e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 23338 ATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGC 23397 || ||| ||||| |||||||| | |||||||||||| || || ||||| || || || Sbjct 424045 ATCTTCCACGCGCCTCATAAACAAATCCGGTATCCACAGTGCAAGAAACAGGTCCCGTGC 423986 Query 23398 GCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATG 23457 || | ||||| ||||||||| || ||||| | || | | || |||| ||| Sbjct 423985 TCGAATTTCCTCGGCGCCGGTGTTTTTACGTAAATCAACGAATTGCTGAACATCCGGATG 423926 Query 23458 CCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTA 23517 ||| || || ||||| ||||| || || || || | |||||||| |||||||||||||| Sbjct 423925 CCATGGTTCAAGGTACACGGCGAAAGCACCGGGCCGTTTATTGCCACCCTGATCGACGTA 423866 Query 23518 ACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCAC 23553 || || || |||||| |||| || ||||| || || Sbjct 423865 GCGTGCGGTATTGTTGAACACCCTGAGCATGGGTAC 423830 Score = 89.7 bits (98), Expect = 5e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 22179 TCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGCAAGTCCATGTACA 22238 ||||||| |||| ||||| || || | | ||||| ||||| | ||||||||| Sbjct 425795 TCTTCCAGCCGTAGAAATGCATGCTTGTGATTCGACCATAGCTCGGTTGGGCCATGTACA 425736 Query 22239 CATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCATATTTATCAATG 22298 || |||||||| || || || ||||||| || ||||| |||||||||| || | | Sbjct 425735 GGTTTAACGACTGGCTTTGGTCAATAAACGGGCCGCGATCCGCGGCCATATCGATGAGCG 425676 Query 22299 TACGCATCGACATTTCCCATACGGTCTTGTACAG 22332 | | || || |||||||||||||||||||| Sbjct 425675 TTTTCTGTGATATCTCCCATACGGTCTTGTACAG 425642 >seq1875 Length=193106 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||| |||| ||||| || |||||| | || || ||| | || Sbjct 184067 ATGCAGATATTTGTGAAGACTTTGACGGGCAAGACCATCACCCTAGAGGTGGAATCTTCG 184008 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || | ||| ||| || ||||| | || ||||||||| Sbjct 184007 GATACGATCGAGAATGTGAAGGCTAAGATACAGGATAAAGAAGGAATTCCTCCCGACCAG 183948 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || ||||| || || |||||||| || | ||| | ||||| || Sbjct 183947 CAGCGATTGATTTTCGCCGGGAAGCAGTTGGAGGATGGGAGAACTCTTTCGGATTACAAT 183888 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || ||||||||||| |||||||| || Sbjct 183887 ATTCAGAAGGAATCGACTCTCCATCTGGTTCT 183856 >seq6840 Length=28952 Score = 96.9 bits (106), Expect = 3e-15 Identities = 117/158 (74%), Gaps = 6/158 (4%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| || || |||||||||||||| |||| || || |||| Sbjct 19829 ATGCAAATTTTCGTGAAGACGCTTACCGGCAAAACGATCACTCTCGAGGTAGA---GTCC 19773 Query 31253 ---GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || | | || | || ||| | ||| ||||| ||||| | || || ||| Sbjct 19772 AGTGATACGATTGAGAACGTGAAAGCCAAAATTCAAGACAAAGAAGGTATTCCTCCAGAC 19713 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||| |||||||| || |||||||| ||||||||||| Sbjct 19712 CAGCAACGTCTAATTTTTGCTGGCAAGCAGTTGGAAGA 19675 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || || || || |||||||||||||| |||| || || |||| Sbjct 20057 ATGCAGATCTTCGTGAAAACACTTACCGGCAAAACGATCACTCTCGAGGTAGA---GTCC 20001 Query 31253 ---GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || | | || | || ||| | ||| ||||| ||||| | || || ||| Sbjct 20000 AGTGATACGATTGAGAACGTGAAAGCCAAAATTCAAGACAAAGAAGGTATTCCTCCAGAC 19941 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||| |||||||| || |||||||| ||||||||||| ||| | || || Sbjct 19940 CAGCAACGTCTAATTTTTGCTGGCAAGCAGTTGGAAGATGGCCGTACTTTATCTGACTAC 19881 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || ||||| |||||||| || |||| ||| | || | || |||| Sbjct 19880 AACATCCAGAAAGAGTCGACTCTACACTTGGTTCTTCGTCTACGTGGTGGTA 19829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445654078011360