Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2168 141 1e-28 seq3632 118 1e-21 seq584 116 5e-21 >seq2168 Length=109785 Score = 141 bits (156), Expect = 1e-28 Identities = 402/620 (65%), Gaps = 41/620 (7%) Strand=Plus/Minus Query 33597 TGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCA 33656 || || |||||||| | | | |||| || ||| ||| || || || ||||| || || Sbjct 2808 TGTAGGCCCTCGTCCCGAGTTATTAGCTCATTACTAAATGTTAGACCTGGCATCAGTCCC 2749 Query 33657 CGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCA 33716 ||||| |||||||| || || | ||| || ||||| ||||| | |||||| || ||| Sbjct 2748 CGCTTCTTAAGCCAGAAGATTGCAGCAAAACTCCCGGAGAAGAAAACTCCTTCGACCGCA 2689 Query 33717 GCAAAGGCAATAAGTCTCTCTCCATAAC--CGGC--GCTGTCATGTATCCACTTTTGAGC 33772 ||| | || | |||||| || || ||| || | | ||||| ||||| || | || Sbjct 2688 GCATAAGCCACAAGTCTTTCCGCA-AACGTCGACTTGGTGTCACCGATCCAGTTCAGCGC 2630 Query 33773 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGt---- 33828 ||| | || || || ||||| || | || |||||||| ||| | | Sbjct 2629 CCATTGAGCTTTGCGTTCCACACATTCCAGATTGCGAATTGCATTAAATAGAAAATCCCT 2570 Query 33829 ----------------------------tt--ttttCATTACTATCTTTAACATAAGTAT 33858 || ||||| || |||||| | ||| |||| Sbjct 2569 ACACGAAAAACGACAGACAATAGGCTACTTACTTTTCTTTCGGATCTTTGATATATGTAT 2510 Query 33859 CGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGA 33918 | || | ||||| ||||||||||| || |||||||||| || ||||||| || |||| Sbjct 2509 CTATGAGAAGACAGTACATTTCCGAGTGTATGTTTTCAAACGCGATCTGAATGCCATAGA 2450 Query 33919 AACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCA 33978 |||| | ||| || | |||||||||||| | |||||||| | ||||| | Sbjct 2449 AACAACGAGCTTCTGGGATCTGCACTTCTTGGCTGAATCGTTCCAACAGGTTTTCCAAAA 2390 Query 33979 CTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTG 34038 |||| ||||||||||| || ||||| || | |||| | || || | ||| | Sbjct 2389 CTATGCCATCACTGGCAGCGAAAAATGCTAGCACATATGAGATGAAGTGCCGTTCCCCAA 2330 Query 34039 GTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAA 34098 | | || | ||| ||| ||| |||||| || | ||| |||||||| ||||||| Sbjct 2329 CTTTGAGCCGTTCCCAGTCAGTGAAATCTTTCGAAAGATCGACTTCTTCGGGCGTCCAAA 2270 Query 34099 ATGATGCCTCTGCCTTTTTATACATATT-CCAGATGTCATGATATTGGATTGGGAAAATA 34157 | || || | || || || || |||| ||| || || | ||| ||||| || | || Sbjct 2269 ACGAAGCGACCGCTTTCTTGTA-GTATTGCCATATTTCGTCATACTGGATGGGTAGGATT 2211 Query 34158 ACAAATCTATTTGGATTTGG 34177 ||||| | | | || ||||| Sbjct 2210 ACAAACCGAGTAGGGTTTGG 2191 >seq3632 Length=73641 Score = 118 bits (130), Expect = 1e-21 Identities = 396/620 (64%), Gaps = 41/620 (7%) Strand=Plus/Minus Query 33597 TGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCA 33656 || ||||| ||||| | ||| |||| || ||| ||| || || || ||||| || || Sbjct 32158 TGTAGACCTTCGTCGCGACTTATTAGCTCATTACTAAATGTTAGACCTGGCATCAGTCCC 32099 Query 33657 CGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCA 33716 ||||| |||||||| || || | ||| || ||||| ||||| | |||||| |||||| Sbjct 32098 CGCTTCTTAAGCCAGAAGATTGCAGCAAAACTCCCGGAGAAGAAAACTCCTTCGACTGCA 32039 Query 33717 GCAAAGGCAATAAGTCTCTCTCCATAAC--CGGC--GCTGTCATGTATCCACTTTTGAGC 33772 ||| | || | |||||| || || ||| || | | ||||| ||||| || | || Sbjct 32038 GCATAAGCCACAAGTCTTTCCGCA-AACGTCGACTTGGTGTCACCGATCCAGTTCAGCGC 31980 Query 33773 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt-- 33830 ||| | || || || ||||| || | | |||||||| ||| | | Sbjct 31979 CCATTGAGCTTTGCGTTCCACACATTCCAGATTGCGGACTGCATTAAATAGAAAATCCCT 31920 Query 33831 --------------------------------ttttCATTACTATCTTTAACATAAGTAT 33858 ||||| || |||||| | ||| |||| Sbjct 31919 GTACAATAAACGACAATCAACCAGATGCTCACTTTTCTTTTGGATCTTTGATATATGTAT 31860 Query 33859 CGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGA 33918 | || | ||| |||||||| || || | || || || || ||||||| || |||| Sbjct 31859 CTATAAGCAGAGAGTACATTTCGGAGTGTACATTCTCCATTGCAATCTGAATGCCATAGA 31800 Query 33919 AACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCA 33978 |||| | ||| || | ||||| |||||| | |||||||| | ||||| | Sbjct 31799 AACAACGAGCTTCTGCGATCTGTACTTCTTGGCTGAATCGTTCCAACAGGTTTTCCAAAA 31740 Query 33979 CTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTG 34038 |||| ||||||||||| || ||||| || | |||| | || || | ||| | Sbjct 31739 CTATGCCATCACTGGCAGCGAAAAATGCTAGCACATATGAGATGAAGTGCCGTTCCCCAA 31680 Query 34039 GTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAA 34098 | | || | ||| ||| ||| |||||| || | ||| |||||||| || ||||||| Sbjct 31679 CTTTGAGCCGTTCCCAGTCAGTGAAATCTTTCGAAAGATCGACTTCTTCAACCGTCCAAA 31620 Query 34099 ATGATGCCTCTGCCTTTTTATACATATT-CCAGATGTCATGATATTGGATTGGGAAAATA 34157 | || || | || || || || |||| ||| || || | ||| ||||| || | || Sbjct 31619 ACGAAGCGACCGCTTTCTTGTA-GTATTGCCATATTTCGTCATACTGGATGGGTAGGATT 31561 Query 34158 ACAAATCTATTTGGATTTGG 34177 ||||| | | | || ||||| Sbjct 31560 ACAAACCGAGTAGGGTTTGG 31541 >seq584 Length=457511 Score = 116 bits (128), Expect = 5e-21 Identities = 179/251 (71%), Gaps = 6/251 (2%) Strand=Plus/Minus Query 63552 CCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATG 63611 || ||||| | || ||||| | ||| ||| |||||| ||| || ||||||||||| ||| Sbjct 419676 CCACCTGCATTCTTTGAGATAACTGCACATTGTTTTAGCGTATCGTAGATGCCTTCGATG 419617 Query 63612 CTATCATCGATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGC 63670 ||||| |||| ||||| |||| ||||| |||| || | | || || || Sbjct 419616 CTATCGCTCTTCATCGTTAACAAGAAG-CAGCTGGACAACTGTGGCTTCGGCGTCCCAGC 419558 Query 63671 ATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTC 63730 ||| || || || || || ||||| || ||||| || | ||| | | || || ||||| Sbjct 419557 ATTGAACAACGTCGGTGAGGCGTGAGTGAACCACTTCTGAGACATCAAATCATATGTCTC 419498 Query 63731 AATAGCTGAGTCTATATCC--CATTGATGAATTCCTACTGCGACACGCATTAACATGTGC 63788 ||||||| || ||||| ||| |||||||||||| | || ||||| | ||| || Sbjct 419497 AATAGCTCCTTCAATATCATTCAT--ATGAATTCCTACGGACACTCGCATCAGCATATGT 419440 Query 63789 TGAGGTCTTTC 63799 |||||||| || Sbjct 419439 TGAGGTCTCTC 419429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629658901710240