Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq584 109 5e-19 >seq584 Length=457511 Score = 109 bits (120), Expect = 5e-19 Identities = 224/330 (68%), Gaps = 5/330 (2%) Strand=Plus/Minus Query 38223 TACT-ATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATAT 38281 |||| || ||||| |||| || || |||||| |||||||| ||| | ||| ||| Sbjct 419756 TACTGATGCCATTCGATTCCCCATTAGTACCGGCAATATAAGTGCCCAGACTTCGAATAC 419697 Query 38282 --TACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAA 38339 | | || |||||| | |||||||||| ||||| || | || |||||||||| Sbjct 419696 AGTGCACATT--CAATCCCACACCACCTGCATTCTTTGAGATAACTGCACATTGTTTTAG 419639 Query 38340 CGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACAT 38399 |||||| | || ||||| || || || ||| || | || | || || || |||| Sbjct 419638 CGTATCGTAGATGCCTTCGATGCTATCGCTCTTCATCGTTAACAAGAAGCAGCTGGACAA 419579 Query 38400 TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTC 38459 || ||| || || || || || || || || || || || || ||||||| || | Sbjct 419578 CTGTGGCTTCGGCGTCCCAGCATTGAACAACGTCGGTGAGGCGTGAGTGAACCACTTCTG 419519 Query 38460 CGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGA 38519 |||| ||| |||||| || || | | || |||||| ||||| |||| || Sbjct 419518 AGACATCAAATCATATGTCTCAATAGCTCCTTCAATATCATTCATATGAATTCCTACGGA 419459 Query 38520 TACCCTCATTAGCATATGTTGTGGTCTTTC 38549 || | ||| ||||||||||| ||||| || Sbjct 419458 CACTCGCATCAGCATATGTTGAGGTCTCTC 419429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468406743463520