Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq584 118 1e-21 seq2168 116 5e-21 seq3632 105 9e-18 >seq584 Length=457511 Score = 118 bits (130), Expect = 1e-21 Identities = 182/253 (72%), Gaps = 10/253 (4%) Strand=Plus/Minus Query 66345 CCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATA 66404 || ||||| | || ||||| | ||| ||| |||||| |||||| |||||||| || || Sbjct 419676 CCACCTGCATTCTTTGAGATAACTGCACATTGTTTTAGCGTATCGTAGATGCCTTCGATG 419617 Query 66405 CTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACA--TTTGGTGACGACTAGTTCCC 66461 ||||| | |||| ||||| |||| ||||| |||| | ||| || | || || Sbjct 419616 CTATCGCTCTTCATCGTTAACAAGAAG-CAGCTGGACAACTGTGGCTTCGGC--GTCCCA 419560 Query 66462 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 66521 ||||| || || || || || ||||| || ||||| || | ||| | | || || ||| Sbjct 419559 GCATTGAACAACGTCGGTGAGGCGTGAGTGAACCACTTCTGAGACATCAAATCATATGTC 419500 Query 66522 TCAATAGCTGAGTCTATATCC--CATTGATGAATTCCTACTGCGACACGCATTAACATGT 66579 ||||||||| || ||||| ||| |||||||||||| | || ||||| | ||| | Sbjct 419499 TCAATAGCTCCTTCAATATCATTCAT--ATGAATTCCTACGGACACTCGCATCAGCATAT 419442 Query 66580 GCTGAGGTCTTTC 66592 | |||||||| || Sbjct 419441 GTTGAGGTCTCTC 419429 >seq2168 Length=109785 Score = 116 bits (128), Expect = 5e-21 Identities = 227/333 (68%), Gaps = 2/333 (1%) Strand=Plus/Minus Query 36407 ttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATG 36466 ||||| || |||||| | ||||||||| || | ||||| ||||||||||| || ||| Sbjct 2537 TTTTCTTTCGGATCTTTGATATATGTATCTATGAGAAGACAGTACATTTCCGAGTGTATG 2478 Query 36467 TTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTA 36526 ||||||| || || |||| || |||||||| | ||| || | ||||| |||||| Sbjct 2477 TTTTCAAACGCGATCTGAATGCCATAGAAACAACGAGCTTCTGGGATCTGCACTTCTTGG 2418 Query 36527 CAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAAT 36586 | |||||||| | ||||| ||||| || |||||||| || ||||| || | Sbjct 2417 CTGAATCGTTCCAACAGGTTTTCCAAAACTATGCCATCACTGGCAGCGAAAAATGCTAGC 2358 Query 36587 ACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTA 36646 |||| | || || | ||| | | || | ||| ||| ||| |||||| Sbjct 2357 ACATATGAGATGAAGTGCCGTTCCCCAACTTTGAGCCGTTCCCAGTCAGTGAAATCTTTC 2298 Query 36647 GATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATT-CCA 36705 || | ||| |||||||| |||||||| || || | || || || || |||| ||| Sbjct 2297 GAAAGATCGACTTCTTCGGGCGTCCAAAACGAAGCGACCGCTTTCTTGTA-GTATTGCCA 2239 Query 36706 GATGTCATGATATTGAATTGGAAAAATAACAAA 36738 || || | ||| || || || | || ||||| Sbjct 2238 TATTTCGTCATACTGGATGGGTAGGATTACAAA 2206 >seq3632 Length=73641 Score = 105 bits (116), Expect = 9e-18 Identities = 387/605 (64%), Gaps = 41/605 (7%) Strand=Plus/Minus Query 36173 TGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCA 36232 |||||||| ||||| | ||| |||| || || ||| || || || ||||| || || Sbjct 32158 TGTAGACCTTCGTCGCGACTTATTAGCTCATTACTAAATGTTAGACCTGGCATCAGTCCC 32099 Query 36233 CGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCC 36292 ||||| |||||||| || || | ||||| || || ||||||| |||||| ||||| Sbjct 32098 CGCTTCTTAAGCCAGAAGATTGCAGCAAAACTCCCGGAGAAGAAAACTCCTTCGACTGCA 32039 Query 36293 GCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT----GTCATGTATCCACTTTTGAGC 36348 ||| | || | |||||| || || ||| ||| |||| ||||| || | || Sbjct 32038 GCATAAGCCACAAGTCTTTCCGCA-AACGTCGACTTGGTGTCACCGATCCAGTTCAGCGC 31980 Query 36349 CCAATCGGCCTTCTTTTTTACACA----AG----------GCATTG---------TCTCT 36385 ||| | || || || ||||| || ||||| || || Sbjct 31979 CCATTGAGCTTTGCGTTCCACACATTCCAGATTGCGGACTGCATTAAATAGAAAATCCCT 31920 Query 36386 ATAGCATTAAAGAGAT------AGttt-----ttttCATTACTATCTTTAACATATGTAT 36434 || || || || | || | ||||| || |||||| | |||||||| Sbjct 31919 GTACAATAAACGACAATCAACCAGATGCTCACTTTTCTTTTGGATCTTTGATATATGTAT 31860 Query 36435 CAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGA 36494 | || | ||| |||||||| || || | || || || || || |||| || |||| Sbjct 31859 CTATAAGCAGAGAGTACATTTCGGAGTGTACATTCTCCATTGCAATCTGAATGCCATAGA 31800 Query 36495 AACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCA 36554 |||| | ||| || | |||||||||||| | |||||||| | ||||| | Sbjct 31799 AACAACGAGCTTCTGCGATCTGTACTTCTTGGCTGAATCGTTCCAACAGGTTTTCCAAAA 31740 Query 36555 CTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTG 36614 |||| || |||||||| || ||||| || | |||| | || || | ||| Sbjct 31739 CTATGCCATCACTGGCAGCGAAAAATGCTAGCACATATGAGATGAAGTGCCGTTCCCCAA 31680 Query 36615 GTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAA 36674 | | || | ||| ||| ||| |||||| || | ||| |||||||| || ||||||| Sbjct 31679 CTTTGAGCCGTTCCCAGTCAGTGAAATCTTTCGAAAGATCGACTTCTTCAACCGTCCAAA 31620 Query 36675 ATGATGCCTCTGCCTTTTTATACATATT-CCAGATGTCATGATATTGAATTGGAAAAATA 36733 | || || | || || || || |||| ||| || || | ||| || || || | || Sbjct 31619 ACGAAGCGACCGCTTTCTTGTA-GTATTGCCATATTTCGTCATACTGGATGGGTAGGATT 31561 Query 36734 ACAAA 36738 ||||| Sbjct 31560 ACAAA 31556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658006956908720