Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq6840 127 2e-24 seq3632 87.8 2e-12 >seq6840 Length=28952 Score = 127 bits (140), Expect = 2e-24 Identities = 171/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 || || || ||||||||||||||||| || | || |||||||| || ||||| || || Sbjct 19600 TGACCACCGCGTAAACGCAAAACTAAATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCA 19659 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | || | ||||| | ||| || |||||| | || ||||||||||| || ||| Sbjct 19660 GATAAAGTACGGCCATCTTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCTGGA 19719 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTC-CACT-GTGTCGGTGGGCT 139712 || || ||||||||||| ||| |||| | ||| | |||| || | || || ||| || Sbjct 19720 GGAATACCTTCTTTGTC-TTGAATTTTGGCTTTCAC-GTTCTCAATCGTATCACTGGACT 19777 Query 139713 CCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | ||||| | || | ||| |||||||| | ||| || ||||| ||||||||| Sbjct 19778 CTACCTCGAGAGTGATCGTTTTGCCGGTAAGCGTCTTCACGAAAATTTGCATA 19830 Score = 105 bits (116), Expect = 7e-18 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| ||| | ||| ||||| | || |||||||| || ||||| || || Sbjct 19831 CCACCACGTAGACGAAGAACCAAGTGTAGAGTCGACTCTTTCTGGATGTTGTAGTCAGAT 19890 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| | ||| || |||||| | || ||||||||||| || ||||| Sbjct 19891 AAAGTACGGCCATCTTCCAACTGCTTGCCAGCAAAAATTAGACGTTGCTGGTCTGGAGGA 19950 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTC-CACT-GTGTCGGTGGGCTCCA 139715 || ||||||||||| ||| |||| | ||| | |||| || | || || ||| ||| | Sbjct 19951 ATACCTTCTTTGTC-TTGAATTTTGGCTTTCAC-GTTCTCAATCGTATCACTGGACTCTA 20008 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | || | ||| |||||||| | ||||| ||||| || ||||| Sbjct 20009 CCTCGAGAGTGATCGTTTTGCCGGTAAGTGTTTTCACGAAGATCTGCAT 20057 >seq3632 Length=73641 Score = 87.8 bits (96), Expect = 2e-12 Identities = 247/377 (66%), Gaps = 7/377 (2%) Strand=Plus/Plus Query 52576 TGGGCATTGAAATGGATCGAAAACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTT 52635 ||||| |||| ||||||| || ||| | || ||||| ||| | || || || | | Sbjct 31977 TGGGCGCTGAACTGGATCGGTGACACCAAGTCGACGTTTGCGGAAAGACTTGTGGCTTAT 32036 Query 52636 GCTATAGTGGAAGGTGTGtttttttCGGGTAGTTTTGCGGCAATATTTTACATCAAAACC 52695 ||| ||| ||||| || || || || || |||||||| ||||| || | | || | Sbjct 32037 GCTGCAGTCGAAGGAGTTTTCTTCTCCGGGAGTTTTGCTGCAATCTTCTGGCTTAAGAAG 32096 Query 52696 TTGGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATG 52755 ||| | ||||| || || || ||||| || ||| | ||| ||||||||||| | Sbjct 32097 CGGGGACTGATGCCAGGTCTAACATTTAGTAATGAGCTAATAAGTCGCGACGAAGGTCTA 32156 Query 52756 CACACAGATTTTGCGTGTTTGTATTATAA-TACGCGCGTTAAAGAA-AAATTGTCATATG 52813 || || || ||||| || ||| || || ||| ||||||| || || | | Sbjct 32157 CATACGGACTTTGCTTGCATGTTGTACAAGTAC-----ATAAAGAAGAAGCCCTCGAAGG 32211 Query 52814 AAAAAATTCTAGACATGTTTAAAGAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACG 52873 || | | |||| || | ||||| || || | | || | |||| || | || | Sbjct 32212 AACGAGTGCTAGCAATCATGAAAGATGCTGTTCAAGTAGAGCATCAGTTCTTCTCTGATG 32271 Query 52874 CTTTACCCGTATCATTGTTGGGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTG 52933 |||| ||||| || | ||||||||| | ||||||| | || | ||||||| Sbjct 32272 CTTTGCCCGTCAGTCTGATCGGCATGAACTGTAAATTGATGTGTCAATATGTGGAGTTTG 32331 Query 52934 TTGCGGACAGACTGTTG 52950 |||| || | |||||| Sbjct 32332 TTGCCGATCGTCTGTTG 32348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495939004273600