Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fasciola_20hepatica_20[genbank_20GCA_5F000947175.1_202014-12-01] 20,158 sequences; 1,275,107,963 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2168 134 2e-26 seq584 127 3e-24 >seq2168 Length=109785 Score = 134 bits (148), Expect = 2e-26 Identities = 240/348 (69%), Gaps = 2/348 (1%) Strand=Plus/Minus Query 50209 TTTTCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATG 50268 ||||| || |||||| | ||| ||||| || | ||||| ||||||||||| || ||| Sbjct 2537 TTTTCTTTCGGATCTTTGATATATGTATCTATGAGAAGACAGTACATTTCCGAGTGTATG 2478 Query 50269 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTA 50328 ||||||| || ||||||| || |||||||| | ||| || | |||||||||||| Sbjct 2477 TTTTCAAACGCGATCTGAATGCCATAGAAACAACGAGCTTCTGGGATCTGCACTTCTTGG 2418 Query 50329 CAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAAT 50388 | |||||||| | ||||| ||||| || |||||||| || ||||| || | Sbjct 2417 CTGAATCGTTCCAACAGGTTTTCCAAAACTATGCCATCACTGGCAGCGAAAAATGCTAGC 2358 Query 50389 ACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTA 50448 |||| | || || || ||| | | || | ||| ||| ||| |||||| Sbjct 2357 ACATATGAGATGAAGTGCCGTTCCCCAACTTTGAGCCGTTCCCAGTCAGTGAAATCTTTC 2298 Query 50449 GATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATT-CCA 50507 || | ||| |||||||| |||||||| || || | || || || || |||| ||| Sbjct 2297 GAAAGATCGACTTCTTCGGGCGTCCAAAACGAAGCGACCGCTTTCTTGTA-GTATTGCCA 2239 Query 50508 GATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGG 50555 || || | ||| ||||| || | || ||||| | | | || ||||| Sbjct 2238 TATTTCGTCATACTGGATGGGTAGGATTACAAACCGAGTAGGGTTTGG 2191 >seq584 Length=457511 Score = 127 bits (140), Expect = 3e-24 Identities = 184/253 (73%), Gaps = 10/253 (4%) Strand=Plus/Minus Query 80224 CCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATG 80283 || ||||| | || ||||| | ||| ||| |||||| |||||| |||||||| || ||| Sbjct 419676 CCACCTGCATTCTTTGAGATAACTGCACATTGTTTTAGCGTATCGTAGATGCCTTCGATG 419617 Query 80284 CTATCATCAATCAT-GTTAAGTAGAAAACAGCTAGACA--TTTGGTGACGACTAGTTCCC 80340 ||||| |||| ||||| |||| ||||| |||| | ||| || | || || Sbjct 419616 CTATCGCTCTTCATCGTTAACAAGAAG-CAGCTGGACAACTGTGGCTTCGGC--GTCCCA 419560 Query 80341 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTC 80400 ||||| || || || || || ||||| || ||||| || | ||||| | || || ||| Sbjct 419559 GCATTGAACAACGTCGGTGAGGCGTGAGTGAACCACTTCTGAGACATCAAATCATATGTC 419500 Query 80401 TCAATAGCTGATTCTATATCC--CATTGATGAATTCCTACCGCGACACGCATTAACATGT 80458 ||||||||| ||| ||||| ||| |||||||||||| | || ||||| | ||| | Sbjct 419499 TCAATAGCTCCTTCAATATCATTCAT--ATGAATTCCTACGGACACTCGCATCAGCATAT 419442 Query 80459 GCTGAGGTCTTTC 80471 | |||||||| || Sbjct 419441 GTTGAGGTCTCTC 419429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718087814219120